3.15.24250

Minor release

• Update ivar to 1.4.3
• Update freyja to 1.5.1-09_01_2024-01-39-2024-09-01

3.15.24219

Minor release:

• updates pangolin to 4.3.1-pdata-1.29
• updates freyja to 1.5.1-07_02_2024-01-27-2024-08-01

3.15.24212

Minor update

• updates Freyja to 1.5.1-07_02_2024-01-27-2024-07-26

3.15.24205

Minor release:

• Updates Freyja to 1.5.1-07_02_2024-01-27-2024-07-23
• Updates Nextclade to 3.8.2
• Updates included SARS-CoV-2 nextclade dataset (use by setting params.download_nextclade_dataset = false)

3.15.24198

Minor release:

• Update freyja to 1.5.1-07_02_2024-01-27-2024-07-16
• Update nextclade to 3.8.1

3.15.24191

Moderate release because of new included genome and new profile!

• added mpox ref (closes #342)
  • use with params.primer_set = "mpx_yale" or use mpx_yale profile.

Minor updates and bug fixes:

• updates freyja to 1.5.1-07_02_2024-01-27-2024-07-09
• updates nextclade to 3.8.0
• updates pangolin to 4.3.1-pdata-1.28.1
• fixes extra rows in vadr (see #344)
• adjusts versions of tools in summary file
• fixes multifasta summary file issue (closes #148)
• added new tests to GA

3.14.240625

Minor Release:

• Update freyja to 1.5.1
• Update nextclade to 3.7.4
• Update pangolin for new pdata to 4.3.1-pdata-1.28

3.14.240618

Minor release:

• Updates Freyja to 1.5.0-06_11_2024-01-17-2024-06-11
• Updates included SARS-CoV-2 nextclade dataset (use by setting params.download_nextclade_dataset = false)

3.14.240610

Minor Release:

• Update freyja to 1.5.0-06_11_2024-01-17-2024-06-11
• Update nextclade to 3.7.1

3.14.240528

Minor release

• Updates Freyja to 1.5.0-05_27_2024-01-08-2024-05-28