Merge pull request #351 from UPHL-BioNGS/update-20240716

Update 20240716
UPHL-BioNGS · Jul 16, 2024 · 30eb718 · 30eb718
2 parents 6f3584d + b5006e2
commit 30eb718
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Showing 3 changed files with 6 additions and 6 deletions.
diff --git a/modules/freyja.nf b/modules/freyja.nf
@@ -3,7 +3,7 @@ process freyja_variants {
   label         "process_medium"
   //errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
   publishDir    path: params.outdir, mode: 'copy', saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
-  container     'staphb/freyja:1.5.1-07_02_2024-01-27-2024-07-09'
+  container     'staphb/freyja:1.5.1-07_02_2024-01-27-2024-07-16'
 
   //#UPHLICA maxForks 10
   //#UPHLICA pod annotation: 'scheduler.illumina.com/presetSize', value: 'standard-xlarge'
@@ -53,7 +53,7 @@ process freyja_demix {
   label         "process_medium"
   //errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
   publishDir    path: params.outdir, mode: 'copy', saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
-  container     'staphb/freyja:1.5.1-07_02_2024-01-27-2024-07-09'
+  container     'staphb/freyja:1.5.1-07_02_2024-01-27-2024-07-16'
 
 
   //#UPHLICA maxForks 10
@@ -105,7 +105,7 @@ process freyja_aggregate {
   tag        "Aggregating results from freyja"
   label      "process_single"
   publishDir path: params.outdir, mode: 'copy', saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
-  container  'staphb/freyja:1.5.1-07_02_2024-01-27-2024-07-09'
+  container  'staphb/freyja:1.5.1-07_02_2024-01-27-2024-07-16'
 
   //#UPHLICA maxForks 10
   //#UPHLICA errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}

diff --git a/modules/nextclade.nf b/modules/nextclade.nf
@@ -2,7 +2,7 @@ process nextclade_dataset {
   tag        "Downloading Dataset"
   label      "process_medium"
   publishDir path: params.outdir, mode: 'copy', saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
-  container  'nextstrain/nextclade:3.8.0'
+  container  'nextstrain/nextclade:3.8.1'
 
   //#UPHLICA maxForks 10
   //#UPHLICA errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
@@ -47,7 +47,7 @@ process nextclade {
   tag        "Clade Determination"
   label      "process_medium"
   publishDir path: params.outdir, mode: 'copy', saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
-  container  'nextstrain/nextclade:3.8.0'
+  container  'nextstrain/nextclade:3.8.1'
 
   //#UPHLICA maxForks 10
   //#UPHLICA errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}

diff --git a/nextflow.config b/nextflow.config
@@ -5,7 +5,7 @@ manifest {
   name              = 'Cecret'
   author            = 'Erin Young'
   homePage          = 'https://github.com/UPHL-BioNGS/Cecret'
-  version           = 'v3.15.24191'
+  version           = 'v3.15.24198'
   defaultBranch     = 'master'
   recurseSubmodules = false
   description       = 'Reference-based consensus creation'