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[Enhancement] Optimize iceberg mor performance of iceberg equality delete #51050

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merged 3 commits into from
Oct 14, 2024

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@stephen-shelby stephen-shelby commented Sep 14, 2024

Why I'm doing:

The current implementation of Iceberg reading eq-delete file for mor is to do a local left anti join in each scanner thread in units of scan range.
There are three problems with this:

  • A large data file such as 1G may have multiple splits, each of which repeatedly reads the same delete file.
  • A delete file may match different data files, causing the same delete file to be read multiple times.
  • Even if data cache is used for delete files, the parsed delete file is used as the right table to build a hash table. In extreme cases, memory usage will be very large. If there are many delete files for users, the query often OOM. Many cases can only run normally under one concurrency.

What I'm doing:

This patch implements iceberg equality deletes as a join, rather than reading the data file as the left table and the delete file as the right table for local left anti join. This optimization replaces the previous solution of using local hash joiner in each scanner thread. Compared to the previous solution, the main purpose is to reduce the overhead of repeatedly reading delete files and repeatedly building hashtable since a iceberg equality delete file may be matched by many data files after iceberg planning. This rule needs to strictly meet the check requirements before it can be rewritten.

Three are three conditions that need to rewrite:

  • iceberg format is v2 format
  • snapshot summary exist equality delete file.
  • exists real delete file in scan task after iceberg job planning.

We'll rewrite three patterns.
The first common case:
iceberg identifier column (also the same as pk) are identifier_col and p1.

mysql> explain select * from pk_int_50_par_int_50;
+---------------------------------------------------------------------------------+
| Explain String                                                                  |
+---------------------------------------------------------------------------------+
| PLAN FRAGMENT 0                                                                 |
|  OUTPUT EXPRS:1: identifier_col | 2: data | 3: par_col                          |
|   PARTITION: UNPARTITIONED                                                      |
|                                                                                 |
|   RESULT SINK                                                                   |
|                                                                                 |
|   5:EXCHANGE                                                                    |
|                                                                                 |
| PLAN FRAGMENT 1                                                                 |
|  OUTPUT EXPRS:                                                                  |
|   PARTITION: RANDOM                                                             |
|                                                                                 |
|   STREAM DATA SINK                                                              |
|     EXCHANGE ID: 05                                                             |
|     UNPARTITIONED                                                               |
|                                                                                 |
|   4:Project                                                                     |
|   |  <slot 1> : 1: identifier_col                                               |
|   |  <slot 2> : 2: data                                                         |
|   |  <slot 3> : 3: par_col                                                      |
|   |                                                                             |
|   3:HASH JOIN                                                                   |
|   |  join op: LEFT ANTI JOIN (BROADCAST)                                        |
|   |  colocate: false, reason:                                                   |
|   |  equal join conjunct: 1: identifier_col = 5: identifier_col                 |
|   |  equal join conjunct: 3: par_col = 6: par_col                               |
|   |  other join predicates: 4: $data_sequence_number < 7: $data_sequence_number |
|   |                                                                             |
|   |----2:EXCHANGE                                                               |
|   |                                                                             |
|   0:IcebergScanNode                                                             |
|      TABLE: pk_int_50_par_int_50                                                |
|      cardinality=119750000                                                      |
|      avgRowSize=4.0                                                             |
|                                                                                 |
| PLAN FRAGMENT 2                                                                 |
|  OUTPUT EXPRS:                                                                  |
|   PARTITION: RANDOM                                                             |
|                                                                                 |
|   STREAM DATA SINK                                                              |
|     EXCHANGE ID: 02                                                             |
|     UNPARTITIONED                                                               |
|                                                                                 |
|   1:IcebergEqualityScanNode                                                     |
|      TABLE: pk_int_50_par_int_50_eq_delete_identifier_col_par_col               |
|      cardinality=497500                                                         |
|      avgRowSize=3.0                                                             |
|      Iceberg identifier columns: [identifier_col, par_col]                      |
+---------------------------------------------------------------------------------+

The second case with mutable pk column:
pk column before altering the table is k1.
pk column after altering the table is k1.

mysql> explain select * from test_k1_and_k2_ab;
+---------------------------------------------------------------------------------+
| Explain String                                                                  |
+---------------------------------------------------------------------------------+
| PLAN FRAGMENT 0                                                                 |
|  OUTPUT EXPRS:1: k1 | 2: k2                                                     |
|   PARTITION: UNPARTITIONED                                                      |
|                                                                                 |
|   RESULT SINK                                                                   |
|                                                                                 |
|   11:EXCHANGE                                                                   |
|                                                                                 |
| PLAN FRAGMENT 1                                                                 |
|  OUTPUT EXPRS:                                                                  |
|   PARTITION: HASH_PARTITIONED: 4: k2                                            |
|                                                                                 |
|   STREAM DATA SINK                                                              |
|     EXCHANGE ID: 11                                                             |
|     UNPARTITIONED                                                               |
|                                                                                 |
|   10:Project                                                                    |
|   |  <slot 1> : 1: k1                                                           |
|   |  <slot 2> : 2: k2                                                           |
|   |                                                                             |
|   9:HASH JOIN                                                                   |
|   |  join op: RIGHT ANTI JOIN (PARTITIONED)                                     |
|   |  colocate: false, reason:                                                   |
|   |  equal join conjunct: 4: k2 = 2: k2                                         |
|   |  other join predicates: 3: $data_sequence_number < 5: $data_sequence_number |
|   |                                                                             |
|   |----8:EXCHANGE                                                               |
|   |                                                                             |
|   1:EXCHANGE                                                                    |
|                                                                                 |
| PLAN FRAGMENT 2                                                                 |
|  OUTPUT EXPRS:                                                                  |
|   PARTITION: HASH_PARTITIONED: 1: k1                                            |
|                                                                                 |
|   STREAM DATA SINK                                                              |
|     EXCHANGE ID: 08                                                             |
|     HASH_PARTITIONED: 2: k2                                                     |
|                                                                                 |
|   7:Project                                                                     |
|   |  <slot 1> : 1: k1                                                           |
|   |  <slot 2> : 2: k2                                                           |
|   |  <slot 3> : 3: $data_sequence_number                                        |
|   |                                                                             |
|   6:HASH JOIN                                                                   |
|   |  join op: LEFT ANTI JOIN (PARTITIONED)                                      |
|   |  colocate: false, reason:                                                   |
|   |  equal join conjunct: 1: k1 = 6: k1                                         |
|   |  other join predicates: 3: $data_sequence_number < 7: $data_sequence_number |
|   |                                                                             |
|   |----5:EXCHANGE                                                               |
|   |                                                                             |
|   3:EXCHANGE                                                                    |
|                                                                                 |
| PLAN FRAGMENT 3                                                                 |
|  OUTPUT EXPRS:                                                                  |
|   PARTITION: RANDOM                                                             |
|                                                                                 |
|   STREAM DATA SINK                                                              |
|     EXCHANGE ID: 05                                                             |
|     HASH_PARTITIONED: 6: k1                                                     |
|                                                                                 |
|   4:IcebergEqualityScanNode                                                     |
|      TABLE: test_k1_and_k2_ab_eq_delete_k1                                      |
|      cardinality=3                                                              |
|      avgRowSize=2.0                                                             |
|      Iceberg identifier columns: [k1]                                           |
|                                                                                 |
|                                                                                 |
| PLAN FRAGMENT 4                                                                 |
|  OUTPUT EXPRS:                                                                  |
|   PARTITION: RANDOM                                                             |
|                                                                                 |
|   STREAM DATA SINK                                                              |
|     EXCHANGE ID: 03                                                             |
|     HASH_PARTITIONED: 1: k1                                                     |
|                                                                                 |
|   2:IcebergScanNode                                                             |
|      TABLE: test_k1_and_k2_ab                                                   |
|      cardinality=5                                                              |
|      avgRowSize=3.0                                                             |
|                                                                                 |
| PLAN FRAGMENT 5                                                                 |
|  OUTPUT EXPRS:                                                                  |
|   PARTITION: RANDOM                                                             |
|                                                                                 |
|   STREAM DATA SINK                                                              |
|     EXCHANGE ID: 01                                                             |
|     HASH_PARTITIONED: 4: k2                                                     |
|                                                                                 |
|   0:IcebergEqualityScanNode                                                     |
|      TABLE: test_k1_and_k2_ab_eq_delete_k2                                      |
|      cardinality=3                                                              |
|      avgRowSize=2.0                                                             |
|      Iceberg identifier columns: [k2]                                           |
+---------------------------------------------------------------------------------+
94 rows in set (0.16 sec)

The third case with partition evolution.

Partition Table With 1 delete schema: [k1, p1], Partition column: [p1]. Write some records to this table.
Then alter table partition field (partition evolution): (p1 -> bucket(5, p1)). Write some records to this table.

mysql> explain select * from test_bucket_table;
+---------------------------------------------------------------------------------+
| Explain String                                                                  |
+---------------------------------------------------------------------------------+
| PLAN FRAGMENT 0                                                                 |
|  OUTPUT EXPRS:1: k1 | 2: k2 | 3: p1                                             |
|   PARTITION: UNPARTITIONED                                                      |
|                                                                                 |
|   RESULT SINK                                                                   |
|                                                                                 |
|   6:EXCHANGE                                                                    |
|                                                                                 |
| PLAN FRAGMENT 1                                                                 |
|  OUTPUT EXPRS:                                                                  |
|   PARTITION: HASH_PARTITIONED: 1: k1, 3: p1, 5: $spec_id                        |
|                                                                                 |
|   STREAM DATA SINK                                                              |
|     EXCHANGE ID: 06                                                             |
|     UNPARTITIONED                                                               |
|                                                                                 |
|   5:Project                                                                     |
|   |  <slot 1> : 1: k1                                                           |
|   |  <slot 2> : 2: k2                                                           |
|   |  <slot 3> : 3: p1                                                           |
|   |                                                                             |
|   4:HASH JOIN                                                                   |
|   |  join op: LEFT ANTI JOIN (PARTITIONED)                                      |
|   |  colocate: false, reason:                                                   |
|   |  equal join conjunct: 1: k1 = 6: k1                                         |
|   |  equal join conjunct: 3: p1 = 7: p1                                         |
|   |  equal join conjunct: 5: $spec_id = 9: $spec_id                             |
|   |  other join predicates: 4: $data_sequence_number < 8: $data_sequence_number |
|   |                                                                             |
|   |----3:EXCHANGE                                                               |
|   |                                                                             |
|   1:EXCHANGE                                                                    |
|                                                                                 |
| PLAN FRAGMENT 2                                                                 |
|  OUTPUT EXPRS:                                                                  |
|   PARTITION: RANDOM                                                             |
|                                                                                 |
|   STREAM DATA SINK                                                              |
|     EXCHANGE ID: 03                                                             |
|     HASH_PARTITIONED: 6: k1, 7: p1, 9: $spec_id                                 |
|                                                                                 |
|   2:IcebergEqualityScanNode                                                     |
|      TABLE: test_bucket_table_eq_delete_k1_p1                                   |
|      cardinality=2                                                              |
|      avgRowSize=4.0                                                             |
|      Iceberg identifier columns: [k1, p1]                                       |
|                                                                                 |
|                                                                                 |
| PLAN FRAGMENT 3                                                                 |
|  OUTPUT EXPRS:                                                                  |
|   PARTITION: RANDOM                                                             |
|                                                                                 |
|   STREAM DATA SINK                                                              |
|     EXCHANGE ID: 01                                                             |
|     HASH_PARTITIONED: 1: k1, 3: p1, 5: $spec_id                                 |
|                                                                                 |
|   0:IcebergScanNode                                                             |
|      TABLE: test_bucket_table                                                   |
|      cardinality=4                                                              |
|      avgRowSize=5.0                                                             |
+---------------------------------------------------------------------------------+
60 rows in set (0.08 sec)

Fixes #issue
some poc tests

case main optimized
10W delete files with repeat matching(real 300 delete files) 10s 0.2s
10W delete files with repeat matching (real 1W delete files) 160s 5s

TODO:

What type of PR is this:

  • BugFix
  • Feature
  • Enhancement
  • Refactor
  • UT
  • Doc
  • Tool

Does this PR entail a change in behavior?

  • Yes, this PR will result in a change in behavior.
  • No, this PR will not result in a change in behavior.

If yes, please specify the type of change:

  • Interface/UI changes: syntax, type conversion, expression evaluation, display information
  • Parameter changes: default values, similar parameters but with different default values
  • Policy changes: use new policy to replace old one, functionality automatically enabled
  • Feature removed
  • Miscellaneous: upgrade & downgrade compatibility, etc.

Checklist:

  • I have added test cases for my bug fix or my new feature
  • This pr needs user documentation (for new or modified features or behaviors)
    • I have added documentation for my new feature or new function
  • This is a backport pr

Bugfix cherry-pick branch check:

  • I have checked the version labels which the pr will be auto-backported to the target branch
    • 3.3
    • 3.2
    • 3.1
    • 3.0
    • 2.5

packy92
packy92 previously approved these changes Sep 19, 2024
Signed-off-by: stephen <[email protected]>
@@ -578,6 +581,29 @@ void HdfsScannerContext::append_or_update_partition_column_to_chunk(ChunkPtr* ch
ck->set_num_rows(row_count);
}

void HdfsScannerContext::append_or_update_extended_column_to_chunk(ChunkPtr* chunk, size_t row_count) {
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@DorianZheng DorianZheng Sep 20, 2024

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If this is the same as the partition column, why not merge them and make it more general instead of rewriting the same logic again

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Yes, please consider to merge into that function, it will be less error-prone.

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done

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didn't see you change anything?

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this commit b918629

@@ -0,0 +1,88 @@
// Copyright 2021-present StarRocks, Inc. All rights reserved.
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I think if we cannot abstract this to leverage connector API, we are not able to abstract the ConnectorScanNode in the future

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yes, we will do this in the future.


long limit = scanOperator.getLimit();
ColumnRefFactory columnRefFactory = context.getColumnRefFactory();
boolean hasPartitionEvolution = deleteSchemas.stream().map(x -> x.specId).distinct().count() > 1;
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If the timeline of operation is as follows:
T1: insert data
T2: partition evolution
T3: delete data

the distinct spec id of the delete schema is 1 but it does partition evolution

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this only represents whether this query need to add spec_id to extended columns.

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So you mean the eq delete files generated in T3 can delete data in T1?

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no. the eq delete files generated in T3 won't be matched by any data files.

} else {
_materialize_slots.push_back(slots[i]);
_materialize_index_in_chunk.push_back(i);
}
}

if (_scan_range.__isset.delete_column_slot_ids && !_scan_range.delete_column_slot_ids.empty()) {
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Can just remove these now? I think it may have problems when user upgrade

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I have tested it. we will throw an exception.
ERROR 1064 (HY000): Unsupported iceberg file content: 2 in the scanner thread.
Relatively few users of mor scene.

.map(schema -> schema.equalityIds)
.flatMap(List::stream)
.distinct()
.map(fieldId -> nativeTable.schema().findColumnName(fieldId))
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native table schema may doesn't have the column in delete schema if table has schema change like drop column?

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iceberg doesn't allow dropping an identifier column.

return Utils.createCompound(CompoundPredicateOperator.CompoundType.AND, onOps);
}

private LogicalIcebergScanOperator buildNewScanOperatorWithUnselectedField(Set<DeleteSchema> deleteSchemas,
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buildNewScanOperatorWithExtendedField?

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yes, it includes not only extended columns, but also the identifier columns that are not selected in user's query.

@@ -1420,12 +1435,15 @@ public PlanFragment visitPhysicalIcebergScan(OptExpression optExpression, ExecPl
.add(ScalarOperatorToExpr.buildExecExpression(predicate, formatterContext));
}

icebergScanNode.preProcessIcebergPredicate(node.getPredicate());
ScalarOperator icebergPredicate = !isEqDeleteScan ? node.getPredicate() :
((PhysicalIcebergEqualityDeleteScanOperator) node).getOriginPredicate();
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what's the difference of originPredicate and predicate

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the schema of iceberg_equality_table is a subset of iceberg_table. eg: iceberg table schema: [c1, c2, c3]. the identifier column is c1. if the query predicate is c1 > 1 and c2 < 3, it can't be used as a predicate of equality_table. so we named it originPredicate in the equality_table.

LogicalIcebergEqualityDeleteScanOperator eqScanOp = new LogicalIcebergEqualityDeleteScanOperator(
equalityDeleteTable, colRefToColumn.build(), columnToColRef.build(), -1, null,
scanOperator.getTableVersionRange());
eqScanOp.setOriginPredicate(newScanOp.getPredicate());
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why eq scan operator need this? OnPredicateMoveAroundRule is not enough?

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we need to get the scan range of equality_table from query level cache by originPredicate.

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sonarcloud bot commented Oct 12, 2024

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[Java-Extensions Incremental Coverage Report]

pass : 0 / 0 (0%)

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[FE Incremental Coverage Report]

pass : 386 / 407 (94.84%)

file detail

path covered_line new_line coverage not_covered_line_detail
🔵 com/starrocks/catalog/IcebergTable.java 0 1 00.00% [257]
🔵 com/starrocks/sql/optimizer/statistics/StatisticsCalculator.java 28 33 84.85% [505, 521, 522, 523, 524]
🔵 com/starrocks/sql/optimizer/operator/logical/LogicalIcebergEqualityDeleteScanOperator.java 22 24 91.67% [48, 49]
🔵 com/starrocks/sql/optimizer/rule/transformation/IcebergEqualityDeleteRewriteRule.java 157 168 93.45% [117, 136, 150, 155, 166, 176, 177, 243, 244, 362, 365]
🔵 com/starrocks/planner/IcebergScanNode.java 87 89 97.75% [207, 214]
🔵 com/starrocks/sql/optimizer/Optimizer.java 1 1 100.00% []
🔵 com/starrocks/sql/optimizer/rule/transformation/OnPredicateMoveAroundRule.java 10 10 100.00% []
🔵 com/starrocks/qe/SessionVariable.java 4 4 100.00% []
🔵 com/starrocks/sql/plan/PlanFragmentBuilder.java 16 16 100.00% []
🔵 com/starrocks/sql/optimizer/operator/OperatorVisitor.java 2 2 100.00% []
🔵 com/starrocks/sql/optimizer/rule/RuleType.java 2 2 100.00% []
🔵 com/starrocks/sql/optimizer/rule/transformation/PushDownPredicateScanRule.java 1 1 100.00% []
🔵 com/starrocks/sql/optimizer/operator/logical/LogicalIcebergScanOperator.java 3 3 100.00% []
🔵 com/starrocks/sql/optimizer/OptExpressionVisitor.java 1 1 100.00% []
🔵 com/starrocks/sql/optimizer/LogicalPlanPrinter.java 1 1 100.00% []
🔵 com/starrocks/planner/IcebergEqualityDeleteScanNode.java 26 26 100.00% []
🔵 com/starrocks/sql/optimizer/operator/physical/PhysicalIcebergEqualityDeleteScanOperator.java 13 13 100.00% []
🔵 com/starrocks/sql/optimizer/operator/OperatorType.java 2 2 100.00% []
🔵 com/starrocks/sql/optimizer/rule/implementation/IcebergEqualityDeleteScanImplementationRule.java 10 10 100.00% []

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[BE Incremental Coverage Report]

pass : 70 / 74 (94.59%)

file detail

path covered_line new_line coverage not_covered_line_detail
🔵 be/src/exec/iceberg/iceberg_delete_builder.h 2 6 33.33% [91, 92, 103, 104]
🔵 be/src/formats/parquet/file_reader.cpp 3 3 100.00% []
🔵 be/src/connector/hive_connector.cpp 32 32 100.00% []
🔵 be/src/exec/hdfs_scanner_orc.cpp 2 2 100.00% []
🔵 be/src/exec/hdfs_scanner.cpp 30 30 100.00% []
🔵 be/src/exec/hdfs_scanner_parquet.cpp 1 1 100.00% []

boolean hasPartitionEvolution = deleteSchemas.stream().map(x -> x.specId).distinct().count() > 1;
if (hasPartitionEvolution && !context.getSessionVariable().enableReadIcebergEqDeleteWithPartitionEvolution()) {
throw new StarRocksConnectorException("Equality delete files aren't supported for tables with partition evolution." +
"You can execute `set enable_read_iceberg_equality_delete_with_partition_evolution = true` then rerun it");
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why need this enable_read_iceberg_equality_delete_with_partition_evolution variable? can we just suppport it by default?

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because there is a semantic inconsistency.


double rowCount = 0;
Set<String> seenFiles = new HashSet<>();
for (FileScanTask fileScanTask : remoteFileDesc.getIcebergScanTasks()) {
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It's worthy to get all file scan task to get the row count? may be we can just set row count to a small number

hdfsScanRange.setOffset(file.content() == FileContent.DATA ? task.start() : 0);
hdfsScanRange.setLength(file.content() == FileContent.DATA ? task.length() : file.fileSizeInBytes());
// For iceberg table we do not need partition id
if (!idToPartitionSlots.containsKey(partitionId)) {
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this is unpatititoned iceberg? the comment looks wired

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I will remove this comment in the next patch.

@stephen-shelby stephen-shelby enabled auto-merge (squash) October 14, 2024 02:17
@stephen-shelby stephen-shelby merged commit e3c6b4e into StarRocks:main Oct 14, 2024
82 of 84 checks passed
ZiheLiu pushed a commit to ZiheLiu/starrocks that referenced this pull request Oct 31, 2024
renzhimin7 pushed a commit to renzhimin7/starrocks that referenced this pull request Nov 7, 2024
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10 participants