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24 Open 16 Closed
24 Open 16 Closed
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Issues list

Creating Pyclone-VI input file from ASCAT and Strelka2 tool outputs
#42 opened Oct 18, 2024 by sreerampeela
Install pyclone-vi on Galaxy Europe
#41 opened Jul 12, 2024 by bdartigues
explain major and minor cn for pyclone input
#40 opened Jul 2, 2024 by endertial
2
AttributeError: module 'numpy' has no attribute 'math'. Did you mean: 'emath'?
#39 opened Jun 27, 2024 by endertial
3
Non-integer copy numbers
#38 opened May 28, 2024 by Pranav-Garg
input data query
#37 opened May 4, 2024 by bagieutopia
Error while running sub-command fit
#36 opened Nov 9, 2023 by AntoniaChroni
3
How can one tell from the results whether a mutation is clonal or not?
#35 opened Nov 9, 2023 by THT-sleepy
too less clones in results
#34 opened Oct 23, 2023 by songmingl
Error in running example file, how to solve this error?
#32 opened Sep 5, 2023 by parth2608
Questions about the calculation of CCF
#30 opened Jul 1, 2023 by huerqiang
Please add numpy version to requirements.txt
#28 opened May 26, 2023 by rabiafidan
1
Pre-processing query
#27 opened Mar 23, 2023 by seedgeorge
2
mutations with no data in some samples
#26 opened Mar 6, 2023 by ZWael
5
Cluster assignment probability filtering
#23 opened May 17, 2022 by rpensch
1
Data loading issue
#22 opened May 8, 2022 by mda-hillmanlab
4
running Pyclone-VI with total copy number
#19 opened Oct 26, 2021 by bhinderb
2
Interpretation of the results
#18 opened Aug 5, 2021 by YanaVassileva
1
Subclonal copy number of segment overlapping mutation
#17 opened Jun 17, 2021 by underbais
Interpret resulting information
#16 opened May 10, 2021 by Antioxidantcoco
installation issue
#15 opened Apr 21, 2021 by Subhayan18
4
Odd errors in larger data sets?
#12 opened Feb 23, 2021 by vortexing
1
CCF estimation for minor_cn=0
#6 opened Oct 29, 2020 by xliu-uth
1
"cellular_prevalence_std" of some "cluster_id" are missing.
#3 opened Sep 10, 2020 by b-niu
3
ProTip! Follow long discussions with comments:>50.