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WIP: Galaxy workflow-run export to ro-crate including provenance #118

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WIP: Galaxy workflow-run export to ro-crate including provenance #118

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Commits on Jan 27, 2022

  1. draft add_workflow_run function

    @pauldg
    pauldg committed Jan 27, 2022
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Commits on Feb 22, 2022

  1. first functions and tests for parsing a galaxy export and extracting … 

    …prov from it
    @pauldg
    pauldg committed Feb 22, 2022
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  2. add process parsing functionc

    @pauldg
    pauldg committed Feb 22, 2022
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Commits on Feb 23, 2022

  1. added functions for parsing history export

    @pauldg
    pauldg committed Feb 23, 2022
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Commits on Mar 3, 2022

  1. added tests and improved prov extraction

    @pauldg
    pauldg committed Mar 3, 2022
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Commits on Mar 7, 2022

  1. Merge branch 'ResearchObject:master' into ga-model-store

    @pauldg
    pauldg authored Mar 7, 2022
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  2. changes

    @pauldg
    pauldg committed Mar 7, 2022
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Commits on Mar 29, 2022

  1. updated provenance_profile.py

    @pauldg
    pauldg committed Mar 29, 2022
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Commits on Mar 30, 2022

  1. updated provenance_profile tests

    @pauldg
    pauldg committed Mar 30, 2022
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Commits on Mar 31, 2022

  1. updates to prov extraction

    @pauldg
    pauldg committed Mar 31, 2022
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  2. added section about galaxy workflow-run export to README

    @pauldg
    pauldg committed Mar 31, 2022
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Commits on Apr 4, 2022

  1. added generated ro-crate to test data

    @pauldg
    pauldg committed Apr 4, 2022
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  2. removed local path from test

    @pauldg
    pauldg committed Apr 4, 2022
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Commits on Apr 5, 2022

  1. fix requirements and pep8

    @simleo
    simleo committed Apr 5, 2022
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Commits on Apr 14, 2022

  1. Merge branch 'ResearchObject:master' into ga-model-store

    @pauldg
    pauldg authored Apr 14, 2022
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Commits on Apr 15, 2022

  1. small updates to metadata parsing

    @pauldg
    pauldg committed Apr 15, 2022
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  2. fixed whitespaces

    @pauldg
    pauldg committed Apr 15, 2022
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Commits on Apr 26, 2022

  1. added dataset registration in prov doc

    @pauldg
    pauldg committed Apr 26, 2022
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Commits on Apr 27, 2022

  1. resolved flake8 errors

    @pauldg
    pauldg committed Apr 27, 2022
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Commits on Jun 23, 2022

  1. updates to prov creation

    @pauldg
    pauldg committed Jun 23, 2022
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  2. example ro-crate notebook

    @pauldg
    pauldg committed Jun 23, 2022
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  3. resolve conflicts with master

    @pauldg
    pauldg committed Jun 23, 2022
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  4. resolved more conflicts

    @pauldg
    pauldg committed Jun 23, 2022
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  5. added add_workflow_run_ro_crate function to rocrate.py

    @pauldg
    pauldg committed Jun 23, 2022
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  6. included pydot and graphviz to requirements

    @pauldg
    pauldg committed Jun 23, 2022
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Commits on Jun 29, 2022

  1. reformat using black, exclude prov graph creation (to avoid installin… 

    …g graphviz)
    @pauldg
    pauldg committed Jun 29, 2022
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Commits on Sep 1, 2022

  1. Merge branch 'ResearchObject:master' into ga-model-store

    @pauldg
    pauldg authored Sep 1, 2022
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Commits on Sep 5, 2022

  1. simplified output provenance

    @pauldg
    pauldg committed Sep 5, 2022
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  2. resolved flake8 issues

    @pauldg
    pauldg committed Sep 5, 2022
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Commits on Sep 9, 2022

  1. first cleanup of code

    @pauldg
    pauldg committed Sep 9, 2022
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Commits on Sep 13, 2022

  1. second cleanup of code

    @pauldg
    pauldg committed Sep 13, 2022
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