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WIP: Galaxy workflow-run export to ro-crate including provenance #118

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pauldg
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@pauldg pauldg commented Mar 31, 2022

Draft implementation for exporting a galaxy workflow-run to an ro-crate, including the extraction of provenance from the galaxy workflow-run metadata.

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simleo commented Apr 5, 2022

I've pushed some (mostly formatting) changes to fix the flake8 and pytest checks, so now the build is passing.

Some files here are taken from cwltool: provenance_constants.py and provenance_profile.py, the latter with modifications to target a Galaxy run. This would require adding the original copyright notice. Since the plan (according to the latest Workflow Run RO-Crate meeting) is to eventually depend on cwltool after some refactoring, however, I guess this is going to change.

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simleo commented Apr 7, 2022

Unresolved conflicts have been pushed to the branch

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pauldg commented Apr 7, 2022

Unresolved conflicts have been pushed to the branch

I've reverted the branch.

@stain stain marked this pull request as draft June 23, 2022 15:01
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