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Fix simdat_crossed for between-subject/between-item factors #66

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Feb 16, 2024
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Fix simdat_crossed for between-subject/between-item factors #66

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Adapted simdat_crossed for between-subject/between-item factors and a…
jschepers Nov 21, 2023
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palday Feb 15, 2024
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jschepers Feb 15, 2024
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34 changes: 27 additions & 7 deletions src/simdat.jl
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Original file line number Diff line number Diff line change
Expand Up @@ -20,6 +20,7 @@ Dict(
:factor2_name => ["F2_level1", "F2_level2", "F2_level3"]
)
```
The order of columns is typically: :subj, subject-within/between conditions, :item, item-within/between conditions, :dv
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In addition to design, the rowtable contains a field `dv` pre-populated
with N(0,1) noise as a basis for further simulating a design.
Expand Down Expand Up @@ -72,19 +73,38 @@ function simdat_crossed(rng::AbstractRNG, subj_n=1, item_n=1;
item_names = vcat(["item"], ib_vars)
item = (; (Symbol(k) => v for (k,v) in zip(item_names, item_vals))...)

# set up within both table
if (isnothing(both_win))
# cross the subject and item tables
design = factorproduct(subj, item)
# Check whether there are experimental factors which are both between-subject and between-item
if isnothing(subj_btwn) || isnothing(item_btwn)
both_between = []
else
both_between = intersect(keys(subj_btwn),keys(item_btwn))
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end

# Case where there are not factors that are both within subject and within item
if(isnothing(both_win))
# and there are no factors that are both between subject and between item
if (isempty(both_between))
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# cross the subject and item tables
design = factorproduct(subj, item)
else
# make sure that each subject/item is only in one level of the between subject/between item factor
design = [merge(x, y) for x in rowtable(subj), y in rowtable(item) if all( [x[var] == y[var] for var in both_between] )]
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end
else
# set up within both table
wc = values(both_win) |> collect
win_prod = Iterators.product(wc...)
win_vals = columntable(win_prod) |> collect
win_names = collect(keys(both_win))
win = (; (Symbol(k) => v for (k,v) in zip(win_names, win_vals))...)
win = (; (Symbol(k) => v for (k,v) in zip(win_names, win_vals))...)
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# cross the subject and item tables with any within factors
design = factorproduct(subj, item, win)
if (isempty(both_between))
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# cross the subject and item tables with any within factors
design = factorproduct(subj, item, win)
else
# make sure that each subject/item is only in one level of the between subject/between item factor
design = [merge(x, y, z) for x in rowtable(subj), y in rowtable(item), z in rowtable(win) if all( [x[var] == y[var] for var in both_between] )]
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end
end

dv = randn(rng, length(design))
Expand Down
157 changes: 157 additions & 0 deletions test/simdat.jl
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Expand Up @@ -39,3 +39,160 @@ using Test
@test Tables.isrowtable(dat)
@test Set(Tables.columnnames(first(dat))) == Set([:subj, :item, :dv])
end

@testset "simdat_crossed between-subjects between-items - simple case" begin
# stimulate data for a case in which a factor is both between-subject and between-item
conditions = Dict(:cond => ["A", "B"])
cond_n = length(conditions[:cond])
subj_n = 2
item_n = 4

data = DataFrame(simdat_crossed(subj_n, item_n,
subj_btwn = conditions,
item_btwn = conditions))

@test nrow(data) == subj_n * (item_n/cond_n)

# Test whether each subject is only in one of the conditions
for s in nlevels(subj_n,"S")
@test length(unique(data[isequal.(data.subj, s), :cond])) == 1
end

# Test whether each item is only in one of the conditions
for i in nlevels(item_n,"I")
@test length(unique(data[isequal.(data.item, i), :cond])) == 1
end

end;

@testset "simdat_crossed between-subjects between-items - complex case" begin
# stimulate data for a case in which a factor is both between-subject and between-item
subj_btwn = Dict(:age => ["O", "Y"],
:cond1 => ["A", "B"],
:cond2 => ["C", "D", "E"])
item_btwn = Dict(:pet => ["cat", "dog"],
:cond1 => ["A", "B"],
:cond2 => ["C", "D", "E"])
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both_win = Dict(:time => ["morning", "evening"])

subj_n = 12
item_n = 12

data = DataFrame(simdat_crossed(subj_n, item_n,
subj_btwn = subj_btwn,
item_btwn = item_btwn,
both_win = both_win))

# Test whether each subject is only in one of the levels of the between-subject/between-items conditions
for s in nlevels(subj_n, "S"), cond in [:cond1, :cond2]
@test length(unique(data[isequal.(data.subj, s), cond])) == 1
end

# Test whether each item is only in one of the conditions
for i in nlevels(item_n, "I"), cond in [:cond1, :cond2]
@test length(unique(data[isequal.(data.item, i), cond])) == 1
end

end;

@testset "simdat_crossed test all combinations" begin
subj_btwn = Dict(:age => ["O", "Y"], # -> item within
:cond1 => ["A", "B"],
:cond2 => ["C", "D", "E"])
item_btwn = Dict(:pet => ["cat", "dog"], # -> subject within
:cond1 => ["A", "B"],
:cond2 => ["C", "D", "E"])
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both_win = Dict(:time => ["morning", "evening"])


subj_n = 12
item_n = 12
data = DataFrame(simdat_crossed(subj_n, item_n,
subj_btwn=subj_btwn,
item_btwn=item_btwn,
both_win=both_win))
s2 = subset(data, :subj => x -> x .== "S02")
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@test all(s2.cond1 .== "A")
@test all(s2.age .== "Y")
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@test length(unique(s2.pet)) == 2 # from item between

#-----
# no subject between
data = DataFrame(simdat_crossed(subj_n, item_n,
item_btwn=item_btwn,
both_win=both_win))

@test nrow(data) == 288 # many more rows because many more effects are within-subject
s2 = subset(data, :subj => x -> x .== "S02")
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@test length(unique(string.(s2.cond1) .* string.(s2.cond2))) == 6 # test all 6 combinations are there
@test length(unique(s2.cond1)) == 2 # now we have both conditions within subject

i2 = subset(data, :item => x -> x .== "I02")
@test all(i2.cond1 .== "A") # but only one because cond1 is between-items here
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#-----
# no item between
data = DataFrame(simdat_crossed(subj_n, item_n,
subj_btwn=subj_btwn,
both_win=both_win))
@test nrow(data) == 288 # many more rows because many more effects are within-subject
i2 = subset(data, :item => x -> x .== "I02")
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@test length(unique(string.(i2.cond1) .* string.(i2.cond2))) == 6 # test all 6 combinations are there
@test length(unique(i2.cond1)) == 2 # now we have both conditions within item

s2 = subset(data, :subj => x -> x .== "S02")
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@test all(s2.cond1 .== "A") # but only one because cond1 is between-subject here


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#---------
data = DataFrame(simdat_crossed(subj_n, item_n,
both_win=both_win))
@test nrow(data) == subj_n*item_n*2
i2 = subset(data, :item => x -> x .== "I02")
s2 = subset(data, :subj => x -> x .== "S02")
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@test length(unique(i2.subj)) == 12
@test length(unique(s2.item)) == 12


#------

data = DataFrame(simdat_crossed(subj_n, item_n))
@test nrow(data) == subj_n * item_n


#-----
data = DataFrame(simdat_crossed(subj_n, item_n,
subj_btwn=subj_btwn,
item_btwn=item_btwn))
@test nrow(data) == 24
i2 = subset(data, :item => x -> x .== "I02")
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@test nrow(i2) == 2
@test length(unique(i2.subj)) == 2 # because age is within item, but between subjects, we have two subjects here
@test length(unique(i2.age)) == 2 # because age is within item

#----
data = DataFrame(simdat_crossed(subj_n, item_n,
subj_btwn=subj_btwn))
@test nrow(data) == 12*12
i2 = subset(data, :item => x -> x .== "I02")
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@test length(unique(i2.subj)) == 12
@test length(unique(i2.cond1 .* i2.cond2 .* i2.age)) == 12 # everything is within item
s2 = subset(data, :subj => x -> x .== "S02")
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@test length(unique(i2.subj)) == 12
@test length(unique(s2.cond1 .* s2.cond2 .* s2.age)) == 1 # everything is within item

#--- same as previous but for item
data = DataFrame(simdat_crossed(subj_n, item_n,
item_btwn=item_btwn))
@test nrow(data) == 12 * 12
i2 = subset(data, :item => x -> x .== "I02")
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@test length(unique(i2.subj)) == 12
@test length(unique(i2.cond1 .* i2.cond2 .* i2.pet)) == 1 # everything is within item
s2 = subset(data, :subj => x -> x .== "S02")
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@test length(unique(i2.subj)) == 12
@test length(unique(s2.cond1 .* s2.cond2 .* s2.pet)) == 12 # everything is within item


end
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