GitHub - RJ333/shell_scripts: bash, awk, grep, sed etc commands used in MobaXterm

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bash, awk, grep, sed etc commands used in MobaXterm

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Name		Name	Last commit message	Last commit date
Latest commit History 6 Commits
LINUXkommandos.pdf		LINUXkommandos.pdf
README.docx		README.docx
Snakemake_log_Rene.docx		Snakemake_log_Rene.docx
all_tax_plot.txt		all_tax_plot.txt
awk_sed_grep_cut_etc.bash		awk_sed_grep_cut_etc.bash
callisto_to_concoct.txt		callisto_to_concoct.txt
commands_etc.txt		commands_etc.txt
connecting_data.txt		connecting_data.txt
count_genes.awk		count_genes.awk
count_genes2.bash		count_genes2.bash
count_multiple_genes.bash		count_multiple_genes.bash
cut_f_janine.txt		cut_f_janine.txt
cut_r_janine.txt		cut_r_janine.txt
extract_contig_sequences.bash		extract_contig_sequences.bash
extract_genes_sequences_prokka.bash		extract_genes_sequences_prokka.bash
fasta_annotation_check_soxB.txt		fasta_annotation_check_soxB.txt
for loop.txt		for loop.txt
metagenomics-workshop.pdf		metagenomics-workshop.pdf
metaxa_to_R.txt		metaxa_to_R.txt
multiQC.txt		multiQC.txt
notepad++ wobble bases.bash		notepad++ wobble bases.bash
otu_rep_to_fasta.py		otu_rep_to_fasta.py
parse_prokka_output_parallel_glyph.sh		parse_prokka_output_parallel_glyph.sh
paths.txt		paths.txt
prokka_ec_for_loop.txt.bat		prokka_ec_for_loop.txt.bat
rep.fasta		rep.fasta
sbatch_fastuniq.txt		sbatch_fastuniq.txt
scp_kallisto_loop.bash		scp_kallisto_loop.bash
scp_loop.sh		scp_loop.sh
scp_upload_test.txt		scp_upload_test.txt
script_UPPMAX_logging.txt		script_UPPMAX_logging.txt
sicherung skripte schweden.txt		sicherung skripte schweden.txt
snakemake_install_and_assembly_start.txt		snakemake_install_and_assembly_start.txt
spass_mit_bash.bash		spass_mit_bash.bash
upload_christins_metatranscriptomes.txt		upload_christins_metatranscriptomes.txt