metaxa_to_R.txt

#metaxa into excel/R
#open *.extraction.results in excel as tab-separated
#checking headers from manual
#one columns header is not mentioned (between average score and start pos)
#note to which division (contig pool 0-6) the contigs belong, add to one table
#important: excel has problems to change between .csv and .tsv, use standard excel sheets for adjusting table
#no taxonomy included, so do the same with tax files from the contig pools
#split up taxonomy levels
#merge on contig name in excel

metaxa_output<-read.csv(file.choose(),sep=";",row.names=1)
head(metaxa_output)
str(metaxa_output)
names(metaxa_output)
hist(metaxa_output$strand)
hist(metaxa_output$reliability)


with, plot(metaxa_output$class,cex.names=0.5))


with(subset(metaxa_output, domain == ), points(weight, Chick, col = "blue"))

euk_sub<-(subset(metaxa_output, metaxa_output$domain == "Eukaryota"))
plot(euk_sub$order,cex.names=0.5)