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Create the Individual File (Jumping Rivers) #561

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Closed

Create the Individual File (Jumping Rivers) #561

wants to merge 117 commits into from

Commits on Feb 7, 2023

  1. Convert D01 up until L470

    @jr-mandy
    jr-mandy committed Feb 7, 2023
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Commits on Feb 8, 2023

  1. Update documentation

    @jr-mandy @github-actions
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  2. Style code

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  3. Fix typo

    @jr-mandy
    jr-mandy committed Feb 8, 2023
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  4. Merge branch 'd01_1' of https://github.com/Public-Health-Scotland/sou… 

    …rce-linkage-files into d01_1
    @jr-mandy
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  5. Update documentation

    @jr-mandy @github-actions
    jr-mandy authored and github-actions[bot] committed Feb 8, 2023
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  6. Fix typos

    @jr-mandy
    jr-mandy committed Feb 8, 2023
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  7. Merge branch 'd01_1' of https://github.com/Public-Health-Scotland/sou… 

    …rce-linkage-files into d01_1
    @jr-mandy
    jr-mandy committed Feb 8, 2023
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  8. Fix warnings?

    @jr-mandy
    jr-mandy committed Feb 8, 2023
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  9. Update DESCRIPTION

    @jr-mandy
    jr-mandy committed Feb 8, 2023
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  10. Update documentation

    @jr-mandy @github-actions
    jr-mandy authored and github-actions[bot] committed Feb 8, 2023
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Commits on Feb 9, 2023

  1. WIP

    @jr-mandy
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  2. Add rowwise() as quarter not vectorised

    @jr-mandy
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  3. Merge branch 'd01_1' of https://github.com/Public-Health-Scotland/sou… 

    …rce-linkage-files into d01_1
    @jr-mandy
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  4. Style code

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Commits on Feb 10, 2023

  1. Merge with d01_1

    @jr-mandy
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Commits on Feb 14, 2023

  1. Until L594

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Commits on Feb 16, 2023

  1. Converted until L677

    @jr-mandy
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Commits on Feb 17, 2023

  1. Until L731

    @jr-mandy
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  2. Update documentation

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  3. Remove test ref

    @jr-mandy
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  4. Merge

    @jr-mandy
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  5. Style code

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Commits on Mar 2, 2023

  1. WIP writing functions to fill postcode in line with previous DOB func… 

    …tions
    @shintoLamp
    shintoLamp committed Mar 2, 2023
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  2. Update documentation

    @shintoLamp @github-actions
    shintoLamp authored and github-actions[bot] committed Mar 2, 2023
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Commits on Apr 3, 2023

  1. Merge branch 'main-R' into d01_2

    @Moohan
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  2. Merge branch 'main-R' into d01_1

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Commits on Apr 4, 2023

  1. Merge branch 'main-R' into d01_2

    @Moohan
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  2. Merge branch 'main-R' into d01_1

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Commits on Apr 18, 2023

  1. Merge branch 'main-R' into d01_1

    @Moohan
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  2. Merge branch 'main-R' into d01_2

    @Moohan
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  3. Merge branch 'main-R' into d01_2

    @Moohan
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  4. Merge branch 'main-R' into d01_1

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Commits on Apr 20, 2023

  1. Merge branch 'main-R' into d01_2

    @Moohan
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  2. Merge branch 'main-R' into d01_1

    @Moohan
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Commits on Apr 26, 2023

  1. Merge branch 'main-R' into d01_2

    @Jennit07
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  2. Merge branch 'main-R' into d01_1

    @Jennit07
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Commits on May 3, 2023

  1. implement quick fix for running 22/23

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  2. Style code

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  3. Merge branch 'main-R' into d01_1

    @Moohan
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  4. Merge branch 'main-R' into d01_2

    @Moohan
    Moohan authored May 3, 2023
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  5. Fix missed comma

    @Moohan
    Moohan committed May 3, 2023
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Commits on May 5, 2023

  1. Exclude DD code for now - TEMP fix

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  2. Correct/rename variables

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  3. Style code

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Commits on May 12, 2023

  1. Include NSU in check_year_valid

    @Jennit07
    Jennit07 committed May 12, 2023
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  2. Update check_year_valid_tests

    @Jennit07
    Jennit07 committed May 12, 2023
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  3. Update documentation

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  4. Update add_nsu_cohort to pick up years valid

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  5. Style code

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  6. remove extra !

    @Jennit07
    Jennit07 committed May 12, 2023
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  7. Exclude cij_delay

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  8. Style code

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  9. Merge branch 'main-R' into d01_2

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Commits on May 15, 2023

  1. Merge branch 'main-R' into no_data_nsu

    @Moohan
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  2. Merge remote-tracking branch 'origin/d01_1' into d01_2

    @Moohan
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Commits on May 16, 2023

  1. Merge branch 'main-R' into d01_2

    @Jennit07
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  2. improve max_no_inf()

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  3. Use pmin/max instead of rowwise

    @Jennit07
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  4. improve min_no_inf()

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  5. Use n_distinct(cij_marker)

    @Jennit07
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  6. deal with distinct(ch_chi_cis)

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  7. use n_distinct(ooh_case_id)

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  8. remove find_non_duplicates

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Commits on May 17, 2023

  1. Merge branch 'main-R' into d01_2

    @Jennit07
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  2. Use dplyr::if_else() 

    Co-authored-by: James McMahon <[email protected]>
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    Jennit07 and Moohan authored May 17, 2023
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  3. Fix typo in ooh_covid_assessment

    @Jennit07
    Jennit07 committed May 17, 2023
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  4. Move ooh_case_id to aggregate

    @Jennit07
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  5. Use slfhelper::ltc_vars

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  6. Remove clean_up_dob 

    Already done in `correct_demographics`
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  7. Update documentation

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  8. [check-spelling] Update metadata 

    Update for https://github.com/Public-Health-Scotland/source-linkage-files/actions/runs/4981058958/attempts/1
Accepted in #654 (comment)

Signed-off-by: check-spelling-bot <[email protected]>
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  9. Use start_next_fy_quarter in place of rowwise

    @Jennit07
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  10. Style code

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  11. Use compute_mid_year_age

    @Jennit07
    Jennit07 committed May 17, 2023
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  12. convert code into data.table for improving speed

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  13. Update get_fy_datesfunction

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  14. remove date_from_fy, use get_fy_dates

    @Jennit07
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  15. Update documentation

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  16. Remove clean_up_postcode function 

    Not needed anymore
    @Jennit07
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  17. Remove non duplicates function/move to aggregate

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  18. Style code

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  19. Update documentation

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  20. Add time stamps to create_individual_file

    @Jennit07
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  21. Style code

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Commits on May 18, 2023

  1. remove clean_up_postcode

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  2. Deal with ch cis episodes

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  3. Style code

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  4. add .data$

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  5. Turn ch aggregate into a data table

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  6. Style code

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  7. use ch_chi_cis

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  8. remove preventable_admissions from aggregate

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  9. exclude hh_in_fy for now

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  10. Style code

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  11. Test - exclude sc_ vars from aggregate

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  12. Style code

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  13. Exclude for now

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  14. exclude for now

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  15. Style code

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Commits on May 23, 2023

  1. automate check_year_valid

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  2. Return dummy file path for NSU not valid

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  3. Style code

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  4. Merge branch 'main-R' into no_data_nsu

    @Jennit07
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Commits on May 24, 2023

  1. Merge branch 'no_data_nsu' into d01_2

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  2. Fix brackets in aggregate

    @Jennit07
    Jennit07 committed May 24, 2023
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  3. TEMP - exclude variables

    @Jennit07
    Jennit07 committed May 24, 2023
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  4. Use phsmethods::sex_from_chi

    @Jennit07
    Jennit07 committed May 24, 2023
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  5. Style code

    @Jennit07 @github-actions
    Jennit07 authored and github-actions[bot] committed May 24, 2023
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  6. Add ungroup()

    @Jennit07
    Jennit07 committed May 24, 2023
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  7. lowercase dob

    @Jennit07
    Jennit07 committed May 24, 2023
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Commits on May 25, 2023

  1. Remove as.data.table

    @Jennit07
    Jennit07 committed May 25, 2023
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Commits on Jun 8, 2023

  1. Merge branch 'main-R' into d01_2

    @Moohan
    Moohan authored Jun 8, 2023
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Commits on Jun 12, 2023

  1. Merge branch 'main-R' into d01_2

    @Moohan
    Moohan authored Jun 12, 2023
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Commits on Jun 19, 2023

  1. Merge branch 'main-R' into d01_2

    @Moohan
    Moohan authored Jun 19, 2023
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Commits on Jun 26, 2023

  1. Merge branch 'main-R' into d01_2

    @Moohan
    Moohan authored Jun 26, 2023
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Commits on Jul 3, 2023

  1. Merge branch 'master' into d01_2

    @Moohan
    Moohan authored Jul 3, 2023
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