Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add MNIInfant to template enum #824

Merged
merged 1 commit into from
Oct 11, 2024
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
1 change: 0 additions & 1 deletion qsiprep/interfaces/anatomical.py
Original file line number Diff line number Diff line change
Expand Up @@ -29,7 +29,6 @@
from scipy.spatial import distance

LOGGER = logging.getLogger("nipype.interface")
KNOWN_TEMPLATES = ["MNI152NLin2009cAsym", "infant"]


class _DiceOverlapInputSpec(BaseInterfaceInputSpec):
Expand Down
2 changes: 1 addition & 1 deletion qsiprep/interfaces/reports.py
Original file line number Diff line number Diff line change
Expand Up @@ -137,7 +137,7 @@ class SubjectSummaryInputSpec(BaseInterfaceInputSpec):
subject_id = Str(desc="Subject ID")
dwi_groupings = traits.Dict(desc="groupings of DWI files and their output names")
output_spaces = traits.List(desc="Target spaces")
template = traits.Enum("MNI152NLin2009cAsym", desc="Template space")
template = traits.Enum("MNI152NLin2009cAsym", "MNIInfant", desc="Template space")


class SubjectSummaryOutputSpec(SummaryOutputSpec):
Expand Down
5 changes: 0 additions & 5 deletions qsiprep/workflows/anatomical/surface.py
Original file line number Diff line number Diff line change
Expand Up @@ -36,11 +36,6 @@
LOGGER = logging.getLogger("nipype.workflow")


TEMPLATE_MAP = {
"MNI152NLin2009cAsym": "mni_icbm152_nlin_asym_09c",
}


def init_surface_recon_wf(omp_nthreads, hires, name="surface_recon_wf"):
r"""
This workflow reconstructs anatomical surfaces using FreeSurfer's ``recon-all``.
Expand Down