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Releases: PennLINC/babs

0.0.8

15 Dec 21:35
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What's Changed

📘 Enhancements in Documentation

  • [DOCS] Example walkthrough: Step 0 does not affect the end result by @asmacdo in #159
  • [DOCS] minor changes in eg walkthrough: explain when Step 0 is optional by @zhao-cy in #164
  • [DOCS] update contact email and add BABS paper by @zhao-cy in #162

New Contributors

Full Changelog: 0.0.7...0.0.8

0.0.7

03 Nov 19:14
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What's Changed

🐛 Bug Fixes

  • [FIX] Fix validator for unzipped input datasets: considering folders not in patterns of sub-* by @zhao-cy in #143

📘 Enhancements in Documentation

  • [DOCS] update docs during paper revision by @zhao-cy in #146
  • [DOCS] achieve checks in NMIND docs domain at silver level by @zhao-cy in #148

Other changes

New Contributors

Full Changelog: 0.0.6...0.0.7

0.0.6

08 Aug 15:31
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What's Changed

🐛 Bug Fixes

  • [FIX] add a function for deciding the command for job cancellation based on cluster system by @zhao-cy in #134

📘 Enhancements in Documentation

Full Changelog: 0.0.5...0.0.6

0.0.5

25 Jul 18:30
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What's Changed

🎉 Exciting New Features

  • [ENH] refactoring of babs_submit function and updator of job status table by @djarecka in #99
  • [DOCS/ENH] Documentation enhancement and review by @zhao-cy in #103
    • This also includes enhancements in CLI and printed messages of BABS functions.
  • [ENH] Add an option of creating a wrapper output folder of all derivatives by @zhao-cy in #116
    • Now, BABS is compatible with latest version of fMRIPrep.

📘 Enhancements in Documentation

  • [DOCS] prepare example walkthrough by @zhao-cy in #81
  • [DOCS] add instructions on how to add partitions for slurm in example walkthrough by @zhao-cy in #108
  • [DOCS] Revisions in docs after testing on MIT slurm cluster by @djarecka in #109
  • [DOCS] Update walkthrough.rst by @yibeichan in #119
  • [DOCS] add guides in eg walkthrough: if there is no internet on compute nodes by @zhao-cy in #121

New Contributors

Full Changelog: 0.0.4...0.0.5

0.0.4

31 May 15:50
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We're excited to release the first version of BABS that works on Slurm clusters! 🎉

What's Changed

🎉 Exciting New Features

  • [ENH] adding slurm as a system type by @djarecka in #92
  • [ENH] test out BABS's Slurm version by @zhao-cy in #96
  • [FIX/ENH] Fix directives and job accounting; enhance example container config YAML filenames by @zhao-cy in #98
    • The docs about Slurm directives are also added in this PR

New Contributors

Full Changelog: 0.0.3...0.0.4

0.0.3

05 May 16:09
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What's Changed

🛠 Breaking Changes

  • [ENH] singularity run: handle FreeSurfer license and Templateflow home by @zhao-cy in #83
  • [ENH] Improve section names in container config YAML file by @zhao-cy in #88

📘 Documentation and examples updates

  • [ENH] update toy BIDS App version used for CircleCI testing by @zhao-cy in #90

Full Changelog: 0.0.2...0.0.3

0.0.2: First release of BABS: for SGE clusters

18 Apr 20:44
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We are excited to announce the first release of BABS! 🎉

It currently works on SGE clusters. This includes functions of babs-init, babs-check-setup, babs-submit, babs-status, and babs-merge. For how to use these functions, please refer to BABS's readthedocs.

BABS is also available on PyPI now. You can install it by running the command below:

pip install babs