This repo contains the necessary code to reproduce the results obtained in the benchmark paper that evaluates existing tools to predict Hypertrophic Cardiomyopathy-associated missense variants. The workflow of the analysis is summarized below:
Please check the jupyter notebook run_benchmarks.ipynb created for the task, where the steps to generate results and corresponding figures are displayed.
To fully reproduce the analysis, you can simply follow the steps below. The only requirement is to have Docker installed.
git clone https://github.com/PedroBarbosa/paper_HCM_benchmark
cd paper_HCM_benchmark
./build_docker.sh
./run_docker.sh
Results should appear in the out folder.