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Fix GO term recommendations #409

Merged
merged 2 commits into from
Dec 15, 2023
Merged

Fix GO term recommendations #409

merged 2 commits into from
Dec 15, 2023

Commits on Dec 15, 2023

  1. Fix GO recommendations 

    Make the size of terms more accurate by calculating only the number of
distinct genes among its descendants and itself.

Fix a bug in the recommendation that was caused by a term appearing in
its own set of descendants and thus being filtering out.

Remove the minSize argument, we now only recommend term that have at
least one novel gene.

Apply the gene size limit when saving a profile by ignoring terms that
exceed the limit.

Combine genes and TIER3 genes to account for removed genes in an unsaved profile

Fix all broken recommendation tests.

Make the minimum overlap configurable
    @arteymix
    arteymix committed Dec 15, 2023
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  2. Document the GO term recommendation algorithm

    @arteymix
    arteymix committed Dec 15, 2023
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