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Add abstraction for (SBML) models #133

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merged 32 commits into from
Jun 22, 2022
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6b26c69
Add abstraction for models
dweindl Apr 26, 2022
796d042
Use new Model in petab.Problem
dweindl Apr 27, 2022
796219b
__init__.py
dweindl Apr 27, 2022
d200396
fix merge
dweindl Apr 28, 2022
52f0ec0
TYPE_CHECKING
dweindl Apr 28, 2022
0736225
Replace most sbml_model occurrences by new Model
dweindl Apr 29, 2022
d798652
doc
dweindl May 4, 2022
9a34c74
..
dweindl May 4, 2022
e0b6e74
Deprecate petab.Problem.from_files
dweindl May 5, 2022
2924c2c
Update petab.Problem to use Model
dweindl May 5, 2022
507c196
Update to test_petab
dweindl May 5, 2022
7d9dae8
Add model type constants; add type code to class; add list of known t…
dweindl May 5, 2022
3d4cda5
Model.to_file
dweindl May 5, 2022
d8d1774
fixup, doc
dweindl May 19, 2022
ee977a7
cleanup assert_model_parameters_in_condition_or_parameter_table
dweindl May 19, 2022
c04a75d
Use petab.Model in parameter mapping
dweindl May 19, 2022
69f826e
sbml_model->model
dweindl May 20, 2022
9bc1e6f
cleanup
dweindl May 20, 2022
4996699
Merge branch 'develop' into abstract_model
dweindl May 24, 2022
d540c47
fixup merge
dweindl May 24, 2022
78251a0
Merge branch 'develop' into abstract_model
dweindl May 25, 2022
bb61a12
fix merge
dweindl May 25, 2022
66e1bc4
Merge branch 'develop' into abstract_model
dweindl May 25, 2022
ed7c23c
is/are
dweindl Jun 20, 2022
4dbcfe0
Update petab/models/model.py
dweindl Jun 20, 2022
804188b
Update petab/models/model.py
dweindl Jun 20, 2022
3b337b0
the
dweindl Jun 20, 2022
d66e18a
import
dweindl Jun 20, 2022
5464928
fixup rename
dweindl Jun 20, 2022
4dcf1f6
PARAMETER_SEPARATOR
dweindl Jun 20, 2022
a9bf397
Merge branch 'develop' into abstract_model
dweindl Jun 20, 2022
49e518c
..
dweindl Jun 21, 2022
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Merge branch 'develop' into abstract_model
dweindl authored May 25, 2022

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commit 66e1bc4e60d6e6469e7d9d79090257b88d2d9aca

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