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Version 19.08.2
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@stevekm stevekm released this 30 Aug 16:02
· 57 commits to master since this release
19.08.2
c43360a
  • increase Nextflow version to 19.07
  • update Depth of Coverage analysis cutoffs
  • several fixes to FACETS analysis steps
  • fixes for SNP-pileup steps used for FACETS
  • disable Varscan2 variant calling
  • update Strelka variant filtering and fixes to vcf table conversion script
  • add post-filter steps to further filter variants after annotation steps
  • update 'submit' methods in Makefile to use new created SLURM submit script for Big Purple
  • update 'submit' methods in Makefile to be compatible with SLURM scancel pipeline cancellation method
  • remove dbSNP filtered variants from LoFreqSomatic output
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