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Small performance improvement to process_item #395

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merged 12 commits into from
Nov 8, 2024
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fix pydantic train test
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jstjohn committed Nov 8, 2024

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commit 3ce2dfa68b517a4d865fac4604d01ed45f6379ce
Original file line number Diff line number Diff line change
@@ -145,7 +145,7 @@ def test_finetune_cli(tmpdir):
if result.returncode != 0:
raise Exception(f"Pretrain recipe failed:\n{cmd_str=}\n{result.stdout=}\n{result.stderr=}")

cmd_str = f"""bionemo-geneformer-train --conf {config} """.strip()
cmd_str = f"bionemo-geneformer-train --conf {config} --model-config-t ExposedFineTuneSeqLenBioBertConfig"
env = dict(**os.environ) # a local copy of the environment
open_port = find_free_network_port()
env["MASTER_PORT"] = str(open_port)
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