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Enh/docs html upload #4

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Enh/docs html upload #4

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14ee56f
bug fixed dealing with units
pbouss Sep 15, 2020
4160ca0
fixed same unit error in trial shuffling
pbouss Sep 15, 2020
1e9132b
added Bielefeld fim.so and adapted filtering and added window param t…
stellalessandra Sep 18, 2020
e534c70
removed max_occ test
stellalessandra Sep 18, 2020
c4c02dd
Merge branch 'master' into enh/accelerated_spade
stellalessandra Sep 21, 2020
3f1d2ac
further unit stuff
pbouss Sep 21, 2020
4a856d3
Merge remote-tracking branch 'origin/fix/bin_shuffling' into enh/acce…
stellalessandra Sep 24, 2020
9b03add
fixed conflict when merging with master
Jan 25, 2021
692862e
Merge branch 'master' into enh/accelerated_spade
Jan 25, 2021
3e7a8f7
Merge branch 'master' into enh/accelerated_spade
Jan 28, 2021
b385033
fixed merge
stellalessandra Feb 8, 2021
929e202
debugging for new fim version
stellalessandra Feb 9, 2021
4bb029f
enabled multithreading in fpgrowth
stellalessandra Feb 17, 2021
bc8bf9f
less verbose in spade
stellalessandra Feb 17, 2021
1f40cd8
added correction factor to rate estimation
pbouss Mar 26, 2021
3f3cfd4
only spiketrain with more than one spikes are corrected
pbouss Mar 26, 2021
aa07269
Merge branch 'enh/accelerated_spade'
stellalessandra Apr 2, 2021
e52dd19
added test of boundary correction
pbouss Apr 12, 2021
96de450
Merge branch 'master' into feature/boundary_correction_rate
pbouss Apr 12, 2021
cb331eb
PEP8
pbouss Apr 12, 2021
efd55a0
revert wrongly merged master
pbouss Apr 12, 2021
88ff1d5
renamed to border correction
pbouss Apr 26, 2021
00c2fed
removed paper citation
pbouss Aug 2, 2021
9cf8e8d
not-new release of scipy
pbouss Aug 4, 2021
ad8c5b1
not-new release of neo
pbouss Aug 4, 2021
7f28dbb
worked in review, especially adding documentation
pbouss Aug 19, 2021
c224e9d
First fix for unittests missing fake_neo objects
mdenker Sep 20, 2021
520c810
Merge branch 'master' into feature/boundary_correction_rate
pbouss Sep 20, 2021
c071f69
updated UE tutorial and requirements to use nixio 1.5.0 (#86)
Moritz-Alexander-Kern Dec 13, 2021
6ca6dd6
updated links for datasets used in tutorials asset and UE
Dec 13, 2021
aa1d4a4
use 'read only' to assure backwards compatibility
Dec 13, 2021
b7954e9
reset outputs of notebook
Dec 13, 2021
78131cc
Changed Typo
pbouss Jan 28, 2022
b13923a
Fixed all GetAllObjsTestCase unit tests
mdenker Feb 3, 2022
83864c0
Started work on Events test case
mdenker Feb 3, 2022
5e8747f
Fixed Events test case
mdenker Feb 4, 2022
0655c49
Fixed Epochs and Spiketrain tests
mdenker Feb 4, 2022
24b5b76
Starting to fix ExtractNeoAttrs
mdenker Feb 4, 2022
454fc17
7 more failing tests for ExtractNeoAttrs
mdenker Feb 4, 2022
efd152c
All neo_tools tests fixed for Neo 0.10
mdenker Feb 4, 2022
35e78be
Enabled dataset generators from neo 0.10.0
mdenker Feb 4, 2022
29727f2
This PR adds SpikeTrainList as output of `get_all_spiketrains()``
mdenker Feb 7, 2022
6d5b88f
Use SpikeTrainList, work around SpikeTrainList.extend() bug.
mdenker Feb 7, 2022
f9beee8
Fix pandas_bridge tests to work without fake_neo()
mdenker Feb 7, 2022
0d3c947
PEP8 Line length corrections
mdenker Feb 7, 2022
db01e3f
More PEP8 finishes
mdenker Feb 7, 2022
d266764
Yet more PEP8 finishes
mdenker Feb 7, 2022
ee4e428
Last PEP8 finish
mdenker Feb 7, 2022
95f84bf
Handle SpikeTrainList as input for BinnedSpikeTrain
mdenker Feb 7, 2022
0e354f2
Add corresponding regression test
mdenker Feb 7, 2022
00dfa38
PEP 8; avoid universal try-except clause
mdenker Feb 7, 2022
2792d0a
Fixed SpikeTrainList issue in spike train synchrony class
mdenker Feb 8, 2022
f82e080
Fixed SpikeTrainList issue in SPADE
mdenker Feb 8, 2022
6d7790b
Pep8 issue
mdenker Feb 8, 2022
81fd5c4
Update elephant/neo_tools.py
Moritz-Alexander-Kern Feb 9, 2022
4b4b523
added CI.yml containing workflows
Feb 11, 2022
08e427a
added badge for CI tests to README.md
Feb 11, 2022
39e69ba
restructured requirements, environment.yml refactored to environment-…
Feb 11, 2022
f3c5ef1
adapted runners according to new new .yml files
Feb 11, 2022
21f6d77
re-add environment.yml for Travis, to be removed together with travis…
Feb 11, 2022
46325ba
Merge branch 'master' into feature/boundary_correction_rate
pbouss Feb 14, 2022
e4c2cef
instantaneous rate test -> more spiketrains to make it run
pbouss Feb 14, 2022
bf3d706
fixed deprecation warnings, replaced homogeneous_poisson_process with…
Feb 15, 2022
be17e58
added import for scipy.signal
Feb 17, 2022
ed9d93b
fixed size of output for instantaneous_rate, edited unittests accordi…
Feb 18, 2022
4493a74
test to check length of outputs
Feb 18, 2022
130ac38
added unittest to check consistency of rate times (should be multiple…
Mar 1, 2022
be4d214
fixed pep8, added comments, restructure
Mar 1, 2022
fdaba6d
added include endpoint option
Mar 9, 2022
3a2f6e9
This removes support of RrcordingChannelGroup in CSD methods.
mdenker Mar 10, 2022
aec3b38
Changed requirements to Neo >=0.10.0
mdenker Mar 10, 2022
9b9ab3a
Fix spiketrain lists in instantaneous rate.
mdenker Mar 10, 2022
2904cee
added notes to docstrings, reformat docstrings and code, removed endp…
Mar 11, 2022
b1ec09d
update requirements in environment-*.yml to neo>=0.10.0
Mar 14, 2022
203dbc9
updated .yml files to python version 3.7
Mar 14, 2022
6cead92
removed python 3.6 from docs 'install.rst', added python version requ…
Mar 14, 2022
727fdc6
Merge branch 'master' into feature/github_actions_CI
Moritz-Alexander-Kern Mar 14, 2022
0459e76
rename travis conda 3.6 extras,opencl runner
Mar 14, 2022
aca906c
Merge remote-tracking branch 'origin/feature/github_actions_CI' into …
Mar 14, 2022
ec9e07e
updated build_wheels workflow to exclude python 3.6
Mar 14, 2022
aef297b
removed redundant line
Mar 14, 2022
84b983e
changed structure of installation for docs runner
Mar 14, 2022
e015862
added extras to docs runner
Mar 14, 2022
d672722
Merge remote-tracking branch 'origin/fix/spiketrainlist_test'
Mar 14, 2022
98aa581
Merge remote-tracking branch 'origin/fix/fakeneo_missing'
Mar 14, 2022
0dc154d
Merge remote-tracking branch 'origin/feature/github_actions_CI'
Mar 14, 2022
76477ec
Merge remote-tracking branch 'origin/fix/update_nixio_1.5.0'
Mar 14, 2022
b2ca7a1
Merge remote-tracking branch 'origin/feature/boundary_correction_rate'
Mar 14, 2022
6efbd7e
Merge branch 'fix/instantaneous_rate_one_point_less'
Mar 14, 2022
a996935
merged changes for instantaneous rate
Mar 14, 2022
d08c7c9
changed trigger for github actions CI
Mar 14, 2022
26ab04e
upload docs build html as artifact
Mar 23, 2022
5fef259
conda runner, use newest pytest version
Mar 23, 2022
5a4f91e
merged master into docs_html_upload
Jul 6, 2022
0c2546c
fixed .yml
Jul 6, 2022
ba00dae
fixed indentation
Jul 6, 2022
00e99ab
Update CI.yml
Moritz-Alexander-Kern Jul 26, 2022
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8 changes: 7 additions & 1 deletion .github/workflows/CI.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -327,7 +327,6 @@ jobs:
os: [ubuntu-latest]

steps:

- name: Get current year-month
id: date
run: echo "::set-output name=date::$(date +'%Y-%m')"
Expand Down Expand Up @@ -372,3 +371,10 @@ jobs:
run: |
cd doc
make html

- name: Upload HTML
if: ${{ github.event.label.name == 'upload html' }}
uses: actions/upload-artifact@v3
with:
name: docs-html
path: doc/_build/html