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Feature/persistent benchmarking #296

Merged
merged 185 commits into from
Aug 11, 2023
Merged

Feature/persistent benchmarking #296

merged 185 commits into from
Aug 11, 2023

Commits on Feb 6, 2023

  1. update radiuss-spack-config submodule

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  2. update uberenv submodule

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  3. update spack to v0.19.0

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  4. run spack clean

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  5. Revert "run spack clean" 

    This reverts commit 5a5a554.
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Commits on Feb 8, 2023

  1. build pipeline with clang 13.0.0

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  2. add corona files to gitlab-ci

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  3. add corona to proper stage

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    yu-nix committed Feb 8, 2023
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  4. fix corona template

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    yu-nix committed Feb 8, 2023
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  5. build sundials without mpi

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  6. add brackets around amdgpu_target

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  7. add target feature support to AMDGPU_TARGET

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  8. turn on verbose build

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  9. remove extra amd features

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  10. remove lassen, quartz jobs. Manually set amdgpu_target

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  11. modify sundials package.py to have amdgpu_target addition mimic cuda_… 

    …arch
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Commits on Feb 9, 2023

  1. update uberenv to v1.0.0

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  2. update to latest radiuss-spack-configs

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  3. update spack commit to v0.19.0

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  4. fix typo, update permissions

    @gardner48
    gardner48 committed Feb 9, 2023
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  5. fix typo

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  6. disable some tests, remove chmod update

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  7. remove chmod update

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  8. add spack-debug

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  9. remove chmod commands

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  10. switch to lassen tests

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  11. comment out chmods

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  12. comment out chmods

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  13. get the first value in amdgpu_target

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  14. remove commented out code, turn off verbose build

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  15. use original concretizer

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  16. Revert "use original concretizer" 

    This reverts commit 8bd8c5c.
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  17. use spack v0.18.1

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Commits on Feb 28, 2023

  1. swap clang version for 15.0.0

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    yu-nix committed Feb 28, 2023
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  2. update spack to v0.19.1 (latest release as of this commit)

    @balos1
    balos1 committed Feb 28, 2023
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  3. re-enable quartz

    @balos1
    balos1 committed Feb 28, 2023
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  4. revert build_and_test.sh to develop

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  5. make it easier to update gitlab ci Spack, document it more clearly

    @balos1
    balos1 committed Feb 28, 2023
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Commits on Mar 1, 2023

  1. remove raja, camp

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Commits on Mar 2, 2023

  1. specify suite-sparse version due to spack bug

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  2. need clang 12.0.1 on quartz

    @balos1
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  3. need netlib-lapack from develop due to bug

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  4. try openblas instead of netlib-lapack with clang

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  5. sync sundials spack package

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    balos1 committed Mar 2, 2023
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  6. try setting superlu_dist libraries direct

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Commits on Mar 4, 2023

  1. re-enable gcc build on lassen

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Commits on Mar 7, 2023

  1. try old way of enabling superlu-dist

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  2. temporarily disable quartz and turn on shared spack

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    balos1 committed Mar 7, 2023
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Commits on Mar 8, 2023

  1. Revert "temporarily disable quartz and turn on shared spack" 

    This reverts commit 1898190.
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  2. disable superlu-dist on lassen for the moment

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Commits on Mar 9, 2023

  1. merge submodule update

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    yu-nix committed Mar 9, 2023
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  2. finish merge. update corona command to flux

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    yu-nix committed Mar 9, 2023
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  3. add sundials+magma+raja job for corona

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Commits on Mar 10, 2023

  1. add precision to corona tpls job

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  2. remove raja due to cuda error

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    yu-nix committed Mar 10, 2023
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  3. fix raja build issue

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    yu-nix committed Mar 10, 2023
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Commits on Mar 13, 2023

  1. switch conditional to check hostname

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    yu-nix committed Mar 13, 2023
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Commits on Mar 15, 2023

  1. add cmake variables to enable custom MPI executable prefix

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    yu-nix committed Mar 15, 2023
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Commits on Mar 17, 2023

  1. add SUNDIALS_TEST_MPIRUN_COMMAND to cmake variables

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Commits on Mar 20, 2023

  1. add scheduler variant to package.py

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  2. turn on mpi for base corona job

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    yu-nix committed Mar 20, 2023
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Commits on Mar 24, 2023

  1. add petsc to quartz jobs, disable for xl compiler on lassen

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  2. turn off petsc for quartz_intel_tpls

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  3. add hypre sub spec to use internal superlu

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  4. restrict hypre version

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Commits on Mar 27, 2023

  1. lower hypre version

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  2. store benchmark cali files in sundials workspace

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Commits on Mar 29, 2023

  1. add back benchmarks variant

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  2. complete merge from develop

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    yu-nix committed Mar 29, 2023
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Commits on Mar 31, 2023

  1. add profile-examples variant to package.py

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Commits on Apr 3, 2023

  1. add examples test command in build_and_bench

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  2. turn off adiak in benchmark ci spec

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  3. update developer docs with info on the CPT suite

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  4. fix syntax error in build_and_bench

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    yu-nix committed Apr 3, 2023
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  5. complete merge

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  6. add ls for debugging

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    yu-nix committed Apr 3, 2023
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Commits on Apr 21, 2023

  1. add benchmark cmake macro and cmake options

    @yu-nix
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  2. adjust cali config to be compatible with spot

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    yu-nix committed Apr 21, 2023
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  3. add benchmark macro calls to benchmark CMakeLists

    @yu-nix
    yu-nix committed Apr 21, 2023
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  4. add benchmark macro to nvector raja

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    yu-nix committed Apr 21, 2023
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  5. separate cali files by benchmark and parameters

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    yu-nix committed Apr 21, 2023
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  6. add benchmark macro to rest of nvector benchmarks

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Commits on Apr 28, 2023

  1. change NUM_NODES to NUM_CORES for clarity

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  2. add adiak option to cmake and adiak specific code

    @yu-nix
    yu-nix committed Apr 28, 2023
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  3. merge develop into persistent-benchmarking

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Commits on May 16, 2023

  1. add Adiak to Sundials

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Commits on May 17, 2023

  1. turn off all runs for this branch

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Commits on May 18, 2023

  1. remove nvector from make: Nothing to be done for 'benchmarks'.

    @yu-nix
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  2. add SundialsAdiak.cmake

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  3. add output dir for benchmark cali files

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    yu-nix committed May 18, 2023
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  4. add custom adiak metadata

    @yu-nix
    yu-nix committed May 18, 2023
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Commits on May 19, 2023

  1. call SUNMemoryHelper_Create after initlaizing the proflier root in main

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  2. use cpp sundials::Context

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Commits on May 22, 2023

  1. c++ wrapper for sundials_memory; adjust advection caliper calls to ha… 

    …ve only one root
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Commits on May 23, 2023

  1. modify cali_dir to be read from env

    @yu-nix
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  2. add a default dir to SUNDIALS_CALI_DIR

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    yu-nix committed May 23, 2023
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Commits on May 24, 2023

  1. rename SUNDIALS_CALI_DIR to SUNDIALS_CALIPER_OUTPUT_DIR

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  2. replace SUNDIALS_CALIPER_OUTPUT_DIR with SUNDIALS_TEST_OUTPUT_DIR

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Commits on May 25, 2023

  1. add cmake command to reconfigure cali output dir

    @yu-nix
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  2. add docs on SPOT, HIP

    @yu-nix
    yu-nix committed May 25, 2023
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  3. add adiak to package.py

    @yu-nix
    yu-nix committed May 25, 2023
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  4. correct cmake command in build_and_test.sh

    @yu-nix
    yu-nix committed May 25, 2023
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  5. add sundials version to set of adiak values

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    yu-nix committed May 25, 2023
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Commits on May 26, 2023

  1. remove sundials version from testRunner

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    yu-nix committed May 26, 2023
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Commits on May 30, 2023

  1. swap order of libraries to link with adiak

    @yu-nix
    yu-nix committed May 30, 2023
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  2. add adiak cmake variables to documentation

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    yu-nix committed May 30, 2023
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Commits on May 31, 2023

  1. change order of dl libs for adiak

    @yu-nix
    yu-nix committed May 31, 2023
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Commits on Jun 1, 2023

  1. a few cmake fixes for setting up adiak

    @balos1
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  2. I dont think we need to specify include directories anymore

    @balos1
    balos1 committed Jun 1, 2023
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  3. move adiak/caliper linking to sundials_add_library

    @balos1
    balos1 committed Jun 1, 2023
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  4. remove caliper/adiak linking from individual packages

    @balos1
    balos1 committed Jun 1, 2023
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Commits on Jun 5, 2023

  1. adjust CALI_CONFIG to only SPOT for test_runner

    @yu-nix
    yu-nix committed Jun 5, 2023
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  2. update for rocmcc 5.5.0

    @yu-nix
    yu-nix committed Jun 5, 2023
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  3. add job to test CI_JOB_ID to metadata

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    yu-nix committed Jun 5, 2023
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  4. fix ci_job_id to be usable as variable in c files

    @yu-nix
    yu-nix committed Jun 5, 2023
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  5. remove rocm loading; put test output into unique directories

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    yu-nix committed Jun 5, 2023
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  6. add HIP cmake options to documentation

    @yu-nix
    yu-nix committed Jun 5, 2023
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Commits on Jun 7, 2023

  1. add spack version to adiak metadata

    @yu-nix
    yu-nix committed Jun 7, 2023
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  2. move unique run folders to within Testing

    @yu-nix
    yu-nix committed Jun 7, 2023
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Commits on Jun 9, 2023

  1. add tpls to adiak metadata

    @yu-nix
    yu-nix committed Jun 9, 2023
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  2. fix a typo

    @yu-nix
    yu-nix committed Jun 9, 2023
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Commits on Jun 12, 2023

  1. add tpl list to adiak metadata

    @yu-nix
    yu-nix committed Jun 12, 2023
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  2. add MPI version and remove irrelevent metadata

    @yu-nix
    yu-nix committed Jun 12, 2023
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  3. update radiuss

    @yu-nix
    yu-nix committed Jun 12, 2023
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  4. fix typo

    @yu-nix
    yu-nix committed Jun 12, 2023
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Commits on Jun 15, 2023

  1. add more compiler metadata

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    yu-nix committed Jun 15, 2023
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Commits on Jun 16, 2023

  1. add docs on local spot usage

    @yu-nix
    yu-nix committed Jun 16, 2023
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Commits on Jun 20, 2023

  1. add documentation on setting up documentation

    @yu-nix
    yu-nix committed Jun 20, 2023
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  2. update answers

    @yu-nix
    yu-nix committed Jun 20, 2023
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Commits on Jun 21, 2023

  1. define ci_job_id with timestamp if gitlab id not available

    @yu-nix
    yu-nix committed Jun 21, 2023
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  2. add ci job start time

    @yu-nix
    yu-nix committed Jun 21, 2023
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  3. fix default case of ci_job_start_time

    @yu-nix
    yu-nix committed Jun 21, 2023
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Commits on Jun 22, 2023

  1. remove ci from variables to make more generic

    @yu-nix
    yu-nix committed Jun 22, 2023
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  2. reorganize caliper benchmark structure

    @yu-nix
    yu-nix committed Jun 22, 2023
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  3. add documenation on benchmarking

    @yu-nix
    yu-nix committed Jun 22, 2023
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  4. add calidir option to testRunner

    @yu-nix
    yu-nix committed Jun 22, 2023
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Commits on Jul 3, 2023

  1. remove hatchet script

    @yu-nix
    yu-nix committed Jul 3, 2023
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  2. complete merge of develop

    @yu-nix
    yu-nix committed Jul 3, 2023
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  3. move parameters to raja CMakeLists.txt

    @yu-nix
    yu-nix committed Jul 3, 2023
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  4. update identifiers for MPI only raja benchmarks

    @yu-nix
    yu-nix committed Jul 3, 2023
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  5. fix parameters for make benchmark for advection_reaction_3D_raja

    @yu-nix
    yu-nix committed Jul 3, 2023
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  6. update docs

    @yu-nix
    yu-nix committed Jul 3, 2023
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  7. fix sphinx warnings

    @yu-nix
    yu-nix committed Jul 3, 2023
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  8. set caliper output dir in package.py

    @yu-nix
    yu-nix committed Jul 3, 2023
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  9. fix syntax of docs

    @yu-nix
    yu-nix committed Jul 3, 2023
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  10. remove profile job

    @yu-nix
    yu-nix committed Jul 3, 2023
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Commits on Jul 20, 2023

  1. Merge branch 'develop' into feature/persistent-benchmarking

    @balos1
    balos1 committed Jul 20, 2023
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  2. Update doc/sundials_developers/source/testing/Spot.rst 

    Co-authored-by: Cody Balos <[email protected]>
    @yu-nix @balos1
    yu-nix and balos1 authored Jul 20, 2023
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  3. Update .gitlab-ci.yml 

    Co-authored-by: Cody Balos <[email protected]>
    @yu-nix @balos1
    yu-nix and balos1 authored Jul 20, 2023
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  4. Update .gitlab-ci.yml 

    Co-authored-by: Cody Balos <[email protected]>
    @yu-nix @balos1
    yu-nix and balos1 authored Jul 20, 2023
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  5. Update .gitlab/spack_packages/sundials/package.py 

    Co-authored-by: Cody Balos <[email protected]>
    @yu-nix @balos1
    yu-nix and balos1 authored Jul 20, 2023
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  6. Update include/sundials/sundials_context.h 

    Co-authored-by: Cody Balos <[email protected]>
    @yu-nix @balos1
    yu-nix and balos1 authored Jul 20, 2023
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Commits on Jul 21, 2023

  1. update SPOT doc

    @yu-nix
    yu-nix committed Jul 21, 2023
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  2. adjust benchmark script

    @yu-nix
    yu-nix committed Jul 21, 2023
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  3. remove change to build_and_test

    @yu-nix
    yu-nix committed Jul 21, 2023
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Commits on Jul 24, 2023

  1. place example cali files in Example folder

    @yu-nix
    yu-nix committed Jul 24, 2023
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  2. add SPOT visualization links

    @yu-nix
    yu-nix committed Jul 24, 2023
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Commits on Jul 25, 2023

  1. change folder name to be less redundant

    @yu-nix
    yu-nix committed Jul 25, 2023
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  2. add links for SPOT visualization

    @yu-nix
    yu-nix committed Jul 25, 2023
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  3. fix hip link

    @yu-nix
    yu-nix committed Jul 25, 2023
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Commits on Jul 26, 2023

  1. Update .gitlab/spack_packages/sundials/package.py 

    Co-authored-by: Cody Balos <[email protected]>
    @yu-nix @balos1
    yu-nix and balos1 authored Jul 26, 2023
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  2. add CPU, GPU options

    @yu-nix
    yu-nix committed Jul 26, 2023
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  3. add caliper-dir variant

    @yu-nix
    yu-nix committed Jul 26, 2023
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  4. complete merge

    @yu-nix
    yu-nix committed Jul 26, 2023
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  5. add AddBenchmark macro to scripts/shared

    @yu-nix
    yu-nix committed Jul 26, 2023
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  6. Merge remote-tracking branch 'origin/develop' into feature/persistent… 

    …-benchmarking
    @balos1
    balos1 committed Jul 26, 2023
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  7. add sundials_memory.hpp to tarscript

    @balos1
    balos1 committed Jul 26, 2023
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  8. add SundialsAdiak to tarscript

    @balos1
    balos1 committed Jul 26, 2023
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  9. shorten diffusion 2D file names

    @yu-nix
    yu-nix committed Jul 26, 2023
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Commits on Jul 27, 2023

  1. Update cmake/macros/SundialsAddBenchmark.cmake 

    Co-authored-by: Cody Balos <[email protected]>
    @yu-nix @balos1
    yu-nix and balos1 authored Jul 27, 2023
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  2. remove extra identifier for Diffusion 2D benchmark

    @yu-nix
    yu-nix committed Jul 27, 2023
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  3. add copyright to SundialsAddBenchmark.cmake

    @yu-nix
    yu-nix committed Jul 27, 2023
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  4. complete merge

    @yu-nix
    yu-nix committed Jul 27, 2023
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  5. turn on adiak independently

    @yu-nix
    yu-nix committed Jul 27, 2023
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Commits on Jul 28, 2023

  1. add +allow-unsupported-compilers

    @yu-nix
    yu-nix committed Jul 28, 2023
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Commits on Aug 2, 2023

  1. switch benchmark script to make benchmark

    @yu-nix
    yu-nix committed Aug 2, 2023
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Commits on Aug 3, 2023

  1. update Lassen benchmark job with new variants

    @yu-nix
    yu-nix committed Aug 3, 2023
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  2. update caliper file directory

    @yu-nix
    yu-nix committed Aug 3, 2023
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Commits on Aug 4, 2023

  1. Merge branch 'develop' into feature/persistent-benchmarking

    @gardner48
    gardner48 authored Aug 4, 2023
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  2. separate benchmarks from SUNDIALS_TEST_DEVTEST

    @yu-nix
    yu-nix committed Aug 4, 2023
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  3. complete merge

    @yu-nix
    yu-nix committed Aug 4, 2023
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  4. remove +profile-examples

    @yu-nix
    yu-nix committed Aug 4, 2023
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Commits on Aug 8, 2023

  1. Merge branch 'develop' into feature/persistent-benchmarking

    @balos1
    balos1 authored Aug 8, 2023
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Commits on Aug 10, 2023

  1. change build path to be in working directory

    @yu-nix
    yu-nix committed Aug 10, 2023
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Commits on Aug 11, 2023

  1. remove old script

    @balos1
    balos1 committed Aug 11, 2023
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