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Code repository associated to "Drug Repurposing for Basal Breast Cancer Subpopulations Using Modular Network Signatures" by H. Coria-Rodríguez, S. Ochoa, G. de Anda-Jáuregui and E. Hernández-Lemus

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Name		Name	Last commit message	Last commit date
Latest commit History 6 Commits
L1000_subset.R		L1000_subset.R
README.md		README.md
cor_matrix.R		cor_matrix.R
enricheDrugs.R		enricheDrugs.R
featureImportance.csv		featureImportance.csv
gseaL1000.R		gseaL1000.R
net_communities.R		net_communities.R
prepro-mRNA.R		prepro-mRNA.R
prepro-methy.R		prepro-methy.R
prepro-miRNA.R		prepro-miRNA.R
surv_plot.R		surv_plot.R
umap_gmm.R		umap_gmm.R
umap_plot.R		umap_plot.R
xgb_monet.R		xgb_monet.R

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Drug Repurposing for Basal Breast CancerSubpopulations Using Modular Network

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Guide for Reproducibility

Main workflow

proprocessing
- prepro-mRNA.R
- prepro-methy.R
- prepro-miRNA.R
umap_gmm.R
- umap_plot.R
surv_plot.R
cor_matrix.R
net_communities
L1000_subset.R
enricheDrugs.R

Supplementary process

xgb_monet.R

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Code repository associated to "Drug Repurposing for Basal Breast Cancer Subpopulations Using Modular Network Signatures" by H. Coria-Rodríguez, S. Ochoa, G. de Anda-Jáuregui and E. Hernández-Lemus

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