Updated for MSigDB 7.5.1

docs/v10/index.html

@@ -216,6 +216,11 @@ <h2>Version Comments</h2>
 					</tr>
 				</thead>
 				<tbody>
+                        <tr>
+                            <td>10.0.11</td>
+                            <td>2022-1-19</td>
+                            <td>Updated to MSigDB v7.5.1.</td>
+                        </tr>
                         <tr>
                             <td>10.0.10</td>
                             <td>2022-1-12</td>

docs/v10/test.md

@@ -252,6 +252,11 @@ R-3.2
 </tr>
 </thead>
 <tbody>
+<tr class="odd">
+<td align="left">10.0.11</td>
+<td align="left">2022-1-19</td>
+<td align="left">Updated to MSigDB v7.5.1.</td>
+</tr>
 <tr class="even">
 <td align="left">10.0.10</td>
 <td align="left">2022-1-12</td>

manifest

@@ -1,4 +1,4 @@
-# Copyright (c) 2003-2020 Broad Institute, Inc., Massachusetts Institute of Technology, and Regents of the University of California.  All rights reserved.
+# Copyright (c) 2003-2022 Broad Institute, Inc., Massachusetts Institute of Technology, and Regents of the University of California.  All rights reserved.
 author=GenePattern
 taskDoc=doc.html
 description=Performs single sample GSEA.  NOTE: with the release of v10.0.1, this module was renamed from "ssGSEAProjection" to just "ssGSEA"
@@ -12,7 +12,7 @@ userid=GenePattern
 quality=production
 taskType=Pathway Analysis
 categories=gsea;pathway analysis
-version=Updated to MSigDB v7.5.
+version=Updated to MSigDB v7.5.1.
 cpuType=any
 os=any
 LSID=urn\:lsid\:broad.mit.edu\:cancer.software.genepattern.module.analysis\:00270\:999999999
@@ -51,7 +51,7 @@ p3_optional=
 p3_prefix=
 p3_prefix_when_specified=
 p3_type=java.io.File
-p3_value=ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c1.all.v7.5.symbols.gmt\=c1.all.v7.5.symbols.gmt [Positional];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.all.v7.5.symbols.gmt\=c2.all.v7.5.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cgp.v7.5.symbols.gmt\=c2.cgp.v7.5.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.v7.5.symbols.gmt\=c2.cp.v7.5.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.biocarta.v7.5.symbols.gmt\=c2.cp.biocarta.v7.5.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.kegg.v7.5.symbols.gmt\=c2.cp.kegg.v7.5.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.pid.v7.5.symbols.gmt\=c2.cp.pid.v7.5.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.reactome.v7.5.symbols.gmt\=c2.cp.reactome.v7.5.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.wikipathways.v7.5.symbols.gmt\=c2.cp.wikipathways.v7.5.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.all.v7.5.symbols.gmt\=c3.all.v7.5.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.mir.v7.5.symbols.gmt\=c3.mir.v7.5.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.mir.mirdb.v7.5.symbols.gmt\=c3.mir.mirdb.v7.5.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.mir.mir_legacy.v7.5.symbols.gmt\=c3.mir.mir_legacy.v7.5.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.tft.v7.5.symbols.gmt\=c3.tft.v7.5.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.tft.gtrd.v7.5.symbols.gmt\=c3.tft.gtrd.v7.5.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.tft.tft_legacy.v7.5.symbols.gmt\=c3.tft.tft_legacy.v7.5.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c4.all.v7.5.symbols.gmt\=c4.all.v7.5.symbols.gmt [Computational];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c4.cgn.v7.5.symbols.gmt\=c4.cgn.v7.5.symbols.gmt [Computational];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c4.cm.v7.5.symbols.gmt\=c4.cm.v7.5.symbols.gmt [Computational];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.all.v7.5.symbols.gmt\=c5.all.v7.5.symbols.gmt [Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.go.v7.5.symbols.gmt\=c5.go.v7.5.symbols.gmt [Gene Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.go.bp.v7.5.symbols.gmt\=c5.go.bp.v7.5.symbols.gmt [Gene Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.go.cc.v7.5.symbols.gmt\=c5.go.cc.v7.5.symbols.gmt [Gene Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.go.mf.v7.5.symbols.gmt\=c5.go.mf.v7.5.symbols.gmt [Gene Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.hpo.v7.5.symbols.gmt\=c5.hpo.v7.5.symbols.gmt [Human Phenotype Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c6.all.v7.5.symbols.gmt\=c6.all.v7.5.symbols.gmt [Oncogenic Signatures];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c7.all.v7.5.symbols.gmt\=c7.all.v7.5.symbols.gmt [Immunologic signatures];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c7.immunesigdb.v7.5.symbols.gmt\=c7.immunesigdb.v7.5.symbols.gmt [Immunologic signatures];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c7.vax.v7.5.symbols.gmt\=c7.vax.v7.5.symbols.gmt [Immunologic signatures];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c8.all.v7.5.symbols.gmt\=c8.all.v7.5.symbols.gmt [cell type signatures];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/h.all.v7.5.symbols.gmt\=h.all.v7.5.symbols.gmt [Hallmarks]
+p3_value=ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c1.all.v7.5.1.symbols.gmt\=c1.all.v7.5.1.symbols.gmt [Positional];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.all.v7.5.1.symbols.gmt\=c2.all.v7.5.1.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cgp.v7.5.1.symbols.gmt\=c2.cgp.v7.5.1.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.v7.5.1.symbols.gmt\=c2.cp.v7.5.1.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.biocarta.v7.5.1.symbols.gmt\=c2.cp.biocarta.v7.5.1.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.kegg.v7.5.1.symbols.gmt\=c2.cp.kegg.v7.5.1.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.pid.v7.5.1.symbols.gmt\=c2.cp.pid.v7.5.1.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.reactome.v7.5.1.symbols.gmt\=c2.cp.reactome.v7.5.1.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c2.cp.wikipathways.v7.5.1.symbols.gmt\=c2.cp.wikipathways.v7.5.1.symbols.gmt [Curated];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.all.v7.5.1.symbols.gmt\=c3.all.v7.5.1.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.mir.v7.5.1.symbols.gmt\=c3.mir.v7.5.1.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.mir.mirdb.v7.5.1.symbols.gmt\=c3.mir.mirdb.v7.5.1.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.mir.mir_legacy.v7.5.1.symbols.gmt\=c3.mir.mir_legacy.v7.5.1.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.tft.v7.5.1.symbols.gmt\=c3.tft.v7.5.1.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.tft.gtrd.v7.5.1.symbols.gmt\=c3.tft.gtrd.v7.5.1.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c3.tft.tft_legacy.v7.5.1.symbols.gmt\=c3.tft.tft_legacy.v7.5.1.symbols.gmt [Motif];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c4.all.v7.5.1.symbols.gmt\=c4.all.v7.5.1.symbols.gmt [Computational];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c4.cgn.v7.5.1.symbols.gmt\=c4.cgn.v7.5.1.symbols.gmt [Computational];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c4.cm.v7.5.1.symbols.gmt\=c4.cm.v7.5.1.symbols.gmt [Computational];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.all.v7.5.1.symbols.gmt\=c5.all.v7.5.1.symbols.gmt [Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.go.v7.5.1.symbols.gmt\=c5.go.v7.5.1.symbols.gmt [Gene Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.go.bp.v7.5.1.symbols.gmt\=c5.go.bp.v7.5.1.symbols.gmt [Gene Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.go.cc.v7.5.1.symbols.gmt\=c5.go.cc.v7.5.1.symbols.gmt [Gene Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.go.mf.v7.5.1.symbols.gmt\=c5.go.mf.v7.5.1.symbols.gmt [Gene Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c5.hpo.v7.5.1.symbols.gmt\=c5.hpo.v7.5.1.symbols.gmt [Human Phenotype Ontology];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c6.all.v7.5.1.symbols.gmt\=c6.all.v7.5.1.symbols.gmt [Oncogenic Signatures];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c7.all.v7.5.1.symbols.gmt\=c7.all.v7.5.1.symbols.gmt [Immunologic signatures];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c7.immunesigdb.v7.5.1.symbols.gmt\=c7.immunesigdb.v7.5.1.symbols.gmt [Immunologic signatures];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c7.vax.v7.5.1.symbols.gmt\=c7.vax.v7.5.1.symbols.gmt [Immunologic signatures];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/c8.all.v7.5.1.symbols.gmt\=c8.all.v7.5.1.symbols.gmt [cell type signatures];ftp\://gpftp.broadinstitute.org/module_support_files/msigdb/gmt/h.all.v7.5.1.symbols.gmt\=h.all.v7.5.1.symbols.gmt [Hallmarks]
 
 p4_default_value=Name
 p4_description=Specifies the gct data column containing gene symbols.  In most cases this will be "Column 1".

release.properties

@@ -1,5 +1,5 @@
-#Wed, 12 Jan 2022 17:37:54 -0800
+#Wed, 19 Jan 2022 17:40:27 -0800
 LSID.noVersion=urn\:lsid\:broad.mit.edu\:cancer.software.genepattern.module.analysis\:00270
 release.version=10.0
-build.number=10
-build.timestamp=Wed, 12 Jan 2022 17\:37\:54 -0800
+build.number=11
+build.timestamp=Wed, 19 Jan 2022 17\:40\:27 -0800