Data description

host_metadata.csv

Only Rattus

Columns (fields):

• host id
• village
• season
• trait 1
• trait 2 ...

microbiome.csv

• Rows are host ids
• Columns are ASV ids
• Cells are relative reads (rows sum to 1)

pathogen_metadata.csv

Columns (fields):

• OTU id
• pathogen_type
• otu_order
• otu_family
• otu_genus
• trait 1 ...

pathogens.csv

• Rows are host ids
• Columns are OTU ids
• Cells are relative reads (rows sum to 1)

Comments

Ask Matan:

• What preprocessing he did on the data.
• is the clustering done properly