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CellProfiler

Software for quantitative analysis of biological images

184 followers
Cambridge, MA

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Overview
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CellProfiler CellProfiler Public

An open-source application for biological image analysis

Python 1k 400
CellProfiler-plugins CellProfiler-plugins Public

Community-contributed and experimental CellProfiler modules.

Python 67 69
CellProfiler-Analyst CellProfiler-Analyst Public

Open-source software for exploring and analyzing large, high-dimensional image-derived data.

Python 158 75
tutorials tutorials Public

CellProfiler tutorial pipelines and images

Jupyter Notebook 93 86
examples examples Public

Example CellProfiler pipelines.

Makefile 15 14

Repositories

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Showing 10 of 30 repositories

CellProfiler Public
An open-source application for biological image analysis

CellProfiler/CellProfiler’s past year of commit activity

Python 1,003 400 313 22 Updated Jul 21, 2025
CellProfiler-Analyst Public
Open-source software for exploring and analyzing large, high-dimensional image-derived data.

CellProfiler/CellProfiler-Analyst’s past year of commit activity

Python 158 75 68 1 Updated Jul 21, 2025
CellProfiler-plugins Public
Community-contributed and experimental CellProfiler modules.

CellProfiler/CellProfiler-plugins’s past year of commit activity

Python 67 69 31 11 Updated Jul 16, 2025
prokaryote Public
CellProfiler’s Java dependencies

CellProfiler/prokaryote’s past year of commit activity

Java 2 GPL-3.0 11 3 2 Updated Jul 12, 2025
python-bioformats Public
Read and write life sciences file formats

CellProfiler/python-bioformats’s past year of commit activity

Python 140 48 72 5 Updated Jun 12, 2025
python-javabridge Public Forked from LeeKamentsky/python-javabridge
Python wrapper for the Java Native Interface

CellProfiler/python-javabridge’s past year of commit activity

Python 23 64 13 2 Updated Jun 12, 2025
tutorials Public
CellProfiler tutorial pipelines and images

CellProfiler/tutorials’s past year of commit activity

Jupyter Notebook 93 BSD-3-Clause 86 3 0 Updated May 7, 2025
centrosome Public
An open source image processing library

CellProfiler/centrosome’s past year of commit activity

Python 19 37 30 1 Updated Mar 31, 2025
core Public
Core classes and components used by CellProfiler

CellProfiler/core’s past year of commit activity

Python 6 24 0 0 Updated Nov 12, 2024
.github Public
Default files are stored here, such as code of conduct

CellProfiler/.github’s past year of commit activity

0 0 0 0 Updated Oct 27, 2024