update instuctors #20
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| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| push: | |
| branches: [main] | |
| pull_request: | |
| branches: [main] | |
| name: build_book.yaml | |
| permissions: read-all | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macos-latest, r: 'release'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - name: Install bookdown | |
| run: | | |
| Rscript -e "install.packages('bookdown')" | |
| - name: Install cowplot | |
| run: | | |
| Rscript -e "install.packages('cowplot')" | |
| - name: Install BiocManager | |
| run: | | |
| Rscript -e "install.packages('BiocManager')" | |
| - name: Install ComplexHeatmap | |
| run: | | |
| Rscript -e "BiocManager::install('ComplexHeatmap')" | |
| - name: Render book | |
| run: | | |
| Rscript -e "bookdown::render_book()" | |