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Issues list

Compile in remote HAL access by default
#310 opened Nov 23, 2024 by diekhans
@diekhans
why is sonLib using -fPIC
#179 opened Dec 10, 2020 by diekhans
hal2maf refgap problems
#174 opened Nov 13, 2020 by diekhans
1
HDF5 1.8.16 apparent problem.
#158 opened Aug 3, 2020 by diekhans
1
need to add phylop support to CI tests
#153 opened Jul 26, 2020 by diekhans
1
halStats output is difficult to use
#150 opened Jul 22, 2020 by diekhans
HAL does not consistently check if getSequence succeeds
#147 opened Jul 19, 2020 by diekhans
1
HAL does not consistently check if openGenome succeeds
#146 opened Jul 19, 2020 by diekhans
1
3
hal2maf should not output blocks in reference gaps
#101 opened Jan 31, 2020 by diekhans
halLiftover needs tests
#86 opened Jun 23, 2019 by diekhans
@diekhans
3
halLiftover creates PSLs with adjacent blocks
#84 opened Jun 21, 2019 by diekhans
1
hal2fasta can be very slow
#81 opened May 14, 2019 by diekhans
1
what is in a rose? halSnps is incorrectly named.
#26 opened Oct 6, 2014 by diekhans
halAlignability algorithm is undocumented
#25 opened Oct 6, 2014 by diekhans
4
halStats command output should be consistently parsable
#24 opened Oct 6, 2014 by diekhans
@diekhans
2
hal commands should use linux standard option syntax and be consistent
#23 opened Oct 6, 2014 by diekhans
@diekhans
1
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