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V1.2.2 Update #82

Merged
merged 3 commits into from
Sep 19, 2024
Merged

V1.2.2 Update #82

merged 3 commits into from
Sep 19, 2024

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dthoward96
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V1.2.2 Release of SeqSender

Changes:

GISAID:

  • FLU GISAID submission metadata now correctly parses partial collection dates. If only year is present, it is now correctly stored in "Collection_Year" and if/when month is also present, it is stored in "Collection_Month". If the entire "YYYY-MM-DD" collection date is present, it is stored in the "Collection_Date" field and "Collection_Year"/"Collection_Month" are left empty, otherwise, if the entire collection date is not present, "Collection_Date" is left empty. All fields are added regardless of whether there are only partial/complete dates present.
  • FLU template/validation metadata has additional fields added.
    • Sampling_Strategy
    • Sequencing_Strategy
    • Sequencing_Technology
    • Assembly_Method
    • Coverage
    • Adamantanes_Resistance_pheno
    • Oseltamivir_Resistance_pheno
    • Zanamivir_Resistance_pheno
    • Peramivir_Resistance_pheno
    • Other_Resistance_pheno

@dthoward96 dthoward96 merged commit a08c840 into master Sep 19, 2024
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@dthoward96 dthoward96 deleted the dev branch September 19, 2024 18:48
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