generated from CDCgov/template
-
Notifications
You must be signed in to change notification settings - Fork 11
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Merge pull request #23 from CDCgov/final-merged
Final merged with added fixes to citations, license, program version, added optional tables, etc.
- Loading branch information
Showing
141 changed files
with
15,157 additions
and
8,183 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,2 @@ | ||
^.*\.Rproj$ | ||
^\.Rproj\.user$ |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1 @@ | ||
[] |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,9 @@ | ||
{ | ||
"sortOrder": [ | ||
{ | ||
"columnIndex": 2, | ||
"ascending": true | ||
} | ||
], | ||
"path": "~/Github/seqsender/docs/articles" | ||
} |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,4 @@ | ||
{ | ||
"activeTab": 1, | ||
"activeTabSourceWindow0": 2 | ||
} |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,14 @@ | ||
{ | ||
"left": { | ||
"splitterpos": 315, | ||
"topwindowstate": "NORMAL", | ||
"panelheight": 892, | ||
"windowheight": 966 | ||
}, | ||
"right": { | ||
"splitterpos": 580, | ||
"topwindowstate": "NORMAL", | ||
"panelheight": 892, | ||
"windowheight": 966 | ||
} | ||
} |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,5 @@ | ||
{ | ||
"TabSet1": 0, | ||
"TabSet2": 0, | ||
"TabZoom": {} | ||
} |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,11 @@ | ||
activeClientUrl="http://localhost:8787/" | ||
build-last-errors="[]" | ||
build-last-errors-base-dir="" | ||
build-last-outputs="[]" | ||
compile_pdf_state="{\"tab_visible\":false,\"running\":false,\"target_file\":\"\",\"output\":\"\",\"errors\":[]}" | ||
displayName="snu3" | ||
files.monitored-path="" | ||
find-in-files-state="{\"handle\":\"\",\"input\":\"\",\"path\":\"\",\"regex\":false,\"ignoreCase\":false,\"results\":{\"file\":[],\"line\":[],\"lineValue\":[],\"matchOn\":[],\"matchOff\":[],\"replaceMatchOn\":[],\"replaceMatchOff\":[]},\"running\":false,\"replace\":false,\"preview\":false,\"gitFlag\":false,\"replacePattern\":\"\"}" | ||
imageDirtyState="1" | ||
portToken="a60fe80fe2a7" | ||
saveActionState="-1" |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1 @@ | ||
{"active_set":"","sets":[]} |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,6 @@ | ||
{ | ||
"source_window_id": "", | ||
"Source": "Source", | ||
"cursorPosition": "12,0", | ||
"scrollLine": "0" | ||
} |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,6 @@ | ||
{ | ||
"source_window_id": "", | ||
"Source": "Source", | ||
"cursorPosition": "18,0", | ||
"scrollLine": "0" | ||
} |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,6 @@ | ||
{ | ||
"source_window_id": "", | ||
"Source": "Source", | ||
"cursorPosition": "18,3", | ||
"scrollLine": "2" | ||
} |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,6 @@ | ||
{ | ||
"source_window_id": "", | ||
"Source": "Source", | ||
"cursorPosition": "18,3", | ||
"scrollLine": "0" | ||
} |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,6 @@ | ||
{ | ||
"source_window_id": "", | ||
"Source": "Source", | ||
"cursorPosition": "11,0", | ||
"scrollLine": "4" | ||
} |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,6 @@ | ||
{ | ||
"source_window_id": "", | ||
"Source": "Source", | ||
"cursorPosition": "18,3", | ||
"scrollLine": "0" | ||
} |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,6 @@ | ||
{ | ||
"source_window_id": "", | ||
"Source": "Source", | ||
"cursorPosition": "133,7", | ||
"scrollLine": "128" | ||
} |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,6 @@ | ||
{ | ||
"source_window_id": "", | ||
"Source": "Source", | ||
"cursorPosition": "41,0", | ||
"scrollLine": "11" | ||
} |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,6 @@ | ||
{ | ||
"source_window_id": "", | ||
"Source": "Source", | ||
"cursorPosition": "18,3", | ||
"scrollLine": "0" | ||
} |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,6 @@ | ||
{ | ||
"source_window_id": "", | ||
"Source": "Source", | ||
"cursorPosition": "11,1", | ||
"scrollLine": "0" | ||
} |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,6 @@ | ||
{ | ||
"source_window_id": "", | ||
"Source": "Source", | ||
"cursorPosition": "135,7", | ||
"scrollLine": "118" | ||
} |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,4 @@ | ||
{ | ||
"source_window_id": "", | ||
"Source": "Source" | ||
} |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,6 @@ | ||
{ | ||
"source_window_id": "", | ||
"Source": "Source", | ||
"cursorPosition": "130,7", | ||
"scrollLine": "117" | ||
} |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,6 @@ | ||
{ | ||
"source_window_id": "", | ||
"Source": "Source", | ||
"cursorPosition": "159,7", | ||
"scrollLine": "148" | ||
} |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,6 @@ | ||
{ | ||
"source_window_id": "", | ||
"Source": "Source", | ||
"cursorPosition": "4,0", | ||
"scrollLine": "0" | ||
} |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,21 @@ | ||
~%2FGithub%2Fseqsender%2F.gitignore="11FFA47D" | ||
~%2FGithub%2Fseqsender%2FDESCRIPTION="8D5998D2" | ||
~%2FGithub%2Fseqsender%2FLICENSE="CA2A269A" | ||
~%2FGithub%2Fseqsender%2FNEWS.md="FB37969B" | ||
~%2FGithub%2Fseqsender%2FREADME.Rmd="707D8EA7" | ||
~%2FGithub%2Fseqsender%2F_pkgdown.yml="0476E19C" | ||
~%2FGithub%2Fseqsender%2Fconfig%2Fmain_config.yaml="67478E68" | ||
~%2FGithub%2Fseqsender%2Finst%2FCITATION="96F7E2CE" | ||
~%2FGithub%2Fseqsender%2Fvignettes%2Fbiosample_submission.Rmd="133055F3" | ||
~%2FGithub%2Fseqsender%2Fvignettes%2Fcompose_installation.Rmd="852CBDEC" | ||
~%2FGithub%2Fseqsender%2Fvignettes%2Fdocker_installation.Rmd="CB36CFA0" | ||
~%2FGithub%2Fseqsender%2Fvignettes%2Ffaqs.Rmd="DE820693" | ||
~%2FGithub%2Fseqsender%2Fvignettes%2Fgenbank_submission.Rmd="8D7E8C0C" | ||
~%2FGithub%2Fseqsender%2Fvignettes%2Fgisaid_cov_submission.Rmd="145F7FB1" | ||
~%2FGithub%2Fseqsender%2Fvignettes%2Fgisaid_flu_submission.Rmd="23CF97DB" | ||
~%2FGithub%2Fseqsender%2Fvignettes%2Fgisaid_options.Rmd="ABEE9B5E" | ||
~%2FGithub%2Fseqsender%2Fvignettes%2Flocal_installation.Rmd="ED898A07" | ||
~%2FGithub%2Fseqsender%2Fvignettes%2Fprerequisites.Rmd="3EA705BD" | ||
~%2FGithub%2Fseqsender%2Fvignettes%2Fsingularity_installation.Rmd="A381AFDE" | ||
~%2FGithub%2Fseqsender%2Fvignettes%2Fsra_options.Rmd="D3D73A1D" | ||
~%2FGithub%2Fseqsender%2Fvignettes%2Fsra_submission.Rmd="31DDB8C3" |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,26 @@ | ||
{ | ||
"id": "042D06D7", | ||
"path": "~/Github/seqsender/NEWS.md", | ||
"project_path": "NEWS.md", | ||
"type": "markdown", | ||
"hash": "427892802", | ||
"contents": "", | ||
"dirty": false, | ||
"created": 1707162056710.0, | ||
"source_on_save": false, | ||
"relative_order": 12, | ||
"properties": { | ||
"source_window_id": "", | ||
"Source": "Source", | ||
"cursorPosition": "4,0", | ||
"scrollLine": "0" | ||
}, | ||
"folds": "", | ||
"lastKnownWriteTime": 1707499282, | ||
"encoding": "UTF-8", | ||
"collab_server": "", | ||
"source_window": "", | ||
"last_content_update": 1707499282031, | ||
"read_only": false, | ||
"read_only_alternatives": [] | ||
} |
4 changes: 4 additions & 0 deletions
4
.Rproj.user/39CB7C5D/sources/session-644ed55e/042D06D7-contents
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,4 @@ | ||
|
||
# seqsender 1.1.0 | ||
* Github Repo: https://github.com/CDCgov/seqsender | ||
* Documentation: https://cdcgov.github.io/seqsender |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,26 @@ | ||
{ | ||
"id": "0CBC917E", | ||
"path": "~/Github/seqsender/vignettes/compose_installation.Rmd", | ||
"project_path": "vignettes/compose_installation.Rmd", | ||
"type": "r_markdown", | ||
"hash": "1875304587", | ||
"contents": "", | ||
"dirty": false, | ||
"created": 1707157109242.0, | ||
"source_on_save": false, | ||
"relative_order": 9, | ||
"properties": { | ||
"source_window_id": "", | ||
"Source": "Source", | ||
"cursorPosition": "133,7", | ||
"scrollLine": "128" | ||
}, | ||
"folds": "", | ||
"lastKnownWriteTime": 1707512280, | ||
"encoding": "UTF-8", | ||
"collab_server": "", | ||
"source_window": "", | ||
"last_content_update": 1707512280458, | ||
"read_only": false, | ||
"read_only_alternatives": [] | ||
} |
Oops, something went wrong.