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Engagement/jessica/15073 louisiana validation (#15608)
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* Adding in enrichment for reference-range
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@JessicaWNava
JessicaWNava authored Aug 14, 2024
1 parent dafd880 commit d34a79e
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Showing 4 changed files with 25 additions and 3 deletions.
2 changes: 1 addition & 1 deletion prime-router/settings/STLTs/LA/la-doh.yml
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Expand Up @@ -99,6 +99,6 @@
credentialName: null
type: "SFTP"
externalName: "elr"
enrichmentSchemaNames: []
enrichmentSchemaNames: ["classpath:/metadata/fhir_transforms/receivers/reference-range-enrichment.yml"]
timeZone: null
dateTimeFormat: "OFFSET"
22 changes: 22 additions & 0 deletions ...uter/src/main/resources/metadata/fhir_transforms/receivers/reference-range-enrichment.yml
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elements:
- name: sr-reference-range
condition: '%resource.referenceRange.text.empty()'
resource: 'Bundle.entry.resource.ofType(Observation)'
bundleProperty: '%resource.referenceRange.text'
value: [ '%resource.value.coding.code' ]
valueSet:
values:
260415000: Not detected
260385009: Negative
895231008: Not detected in pooled specimen
131194007: Non-Reactive
419984006: Not detected
42425007: Not detected
82334004: Not detected
373121007: Negative
455371000124106: Not detected
125154007: Not detected
260373001: Not detected
720735008: Negative
10828004: Negative
11214006: Non-Reactive
2 changes: 1 addition & 1 deletion prime-router/src/testIntegration/resources/datatests/FHIR_to_HL7/sample_LA_20240806-0001.hl7
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@@ -1 +1 @@
MSH|^~\&|CDC PRIME - Atlanta, Georgia (Dekalb)^2.16.840.1.114222.4.1.237821^ISO|Testing Lab^12D4567890^CLIA|LA-ELR^LA-ELR^ISO|LADOH^LADOH^ISO|20240605185501+0000||ORU^R01^ORU_R01|0bab3f94-feb4-4915-939d-1adc5da201f3|P|2.5.1|||NE|NE|USA|UNICODE UTF-8|ENG^English^ISO||PHLabReport-NoAck^ELR_Receiver^2.16.840.1.113883.9.11^ISOSFT|Centers for Disease Control and Prevention|0.2-SNAPSHOT|PRIME ReportStream|0.2-SNAPSHOT||20240605154252+0000PID|1||7c0d1de9-270e-4d9c-a4ec-af92560cec67^^^Testing Lab&12D4567890&CLIA^PI^Testing Lab&12D4567890&CLIA||Granger^Hermione^^^^^L||19900721|F||2028-9^asian^HL70005^^^^2.5.1^^asian|53 Buttonwood Ave^^Brooklyn^LA^11224^USA^^^22011||(212) 555 1234^PRS^CP^^1^212^5551234^^^^^(212) 555 1234|||||||||N^Not Hispanic or Latino^HL70189^^^^2.9^^Not Hispanic or Latino||||||||NORC|RE|0bab3f94-feb4-4915-939d-1adc5da201f3^Testing Lab^12D4567890^CLIA|0bab3f94-feb4-4915-939d-1adc5da201f3^Testing Lab^12D4567890^CLIA|||||||||1245319599^McTester^Phil^^^^^^NPI&2.16.840.1.113883.4.6&ISO^L^^^NPI||(530) 867 5309^WPN^PH^^1^530^8675309^^^^^(530) 867 5309|20240605185458+0000||||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Denver^LA^80210^USA|(530) 867 5309^WPN^PH^^1^530^8675309^^^^^(530) 867 5309|321 Ocean Drive^^Denver^LA^80210^USAOBR|1|0bab3f94-feb4-4915-939d-1adc5da201f3^Testing Lab^12D4567890^CLIA|0bab3f94-feb4-4915-939d-1adc5da201f3^Testing Lab^12D4567890^CLIA|94531-1^SARS-CoV-2 (COVID-19) RNA panel - Respiratory system specimen by NAA with probe detection^LN|||20240605183958+0000|||||||||1245319599^McTester^Phil^^^^^^NPI&2.16.840.1.113883.4.6&ISO^L^^^NPI|(530) 867 5309^WPN^PH^^1^530^8675309^^^^^(530) 867 5309|||||20240605185501+0000|||FOBX|1|CWE|94500-6^SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection^LN^^^^^^COVID-19||260373001^Detected^SCT|||A^Abnormal^HL70078^^^^2.7|||F|||20240605183958+0000|12D4567890^Testing Lab^CLIA||CareStart COVID-19 MDx RT-PCR_Access Bio, Inc.^CareStart COVID-19 MDx RT-PCR^^^^^^^CareStart COVID-19 MDx RT-PCR_Access Bio, Inc.|^^MNI|20240605185458+0000||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Denver^LA^80210^USAOBX|2|CWE|95419-8^Has symptoms related to condition of interest^LN^^^^2.69^^Has symptoms related to condition of interest||Y^Yes^HL70136||||||F|||20240605183958+0000|12D4567890^Testing Lab^CLIA||||||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Denver^LA^80210^USA|||||QSTOBX|3|DT|11368-8^Illness or injury onset date and time^LN^^^^^^Illness or injury onset date and time||20240601000000+0000||||||F|||20240605183958+0000|12D4567890^Testing Lab^CLIA||||||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Denver^LA^80210^USA|||||QSTOBX|4|CWE|82810-3^Pregnancy status^LN^^^^2.68^^Pregnancy status||60001007^Not pregnant^SCT||||||F|||20240605183958+0000|12D4567890^Testing Lab^CLIA||||||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Denver^LA^80210^USA|||||QSTOBX|5|CWE|95418-0^Employed in a healthcare setting^LN^^^^2.69^^Employed in a healthcare setting||Y^Yes^HL70136||||||F|||20240605183958+0000|12D4567890^Testing Lab^CLIA||||||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Denver^LA^80210^USA|||||QSTOBX|6|CWE|95421-4^Resides in a congregate care setting^LN^^^^2.69^^Resides in a congregate care setting||Y^Yes^HL70136||||||F|||20240605183958+0000|12D4567890^Testing Lab^CLIA||||||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Denver^LA^80210^USA|||||QSTSPM|1|0bab3f94-feb4-4915-939d-1adc5da201f3&Testing Lab&12D4567890&CLIA^0bab3f94-feb4-4915-939d-1adc5da201f3&Testing Lab&12D4567890&CLIA||258500001^Nasopharyngeal swab^SCT^^^^2.67^^Nasopharyngeal swab||||87100004^Topography unknown (body structure)^SCT^^^^^^Topography unknown (body structure)|||||||||20240605183958+0000|20240605183958+0000
MSH|^~\&|CDC PRIME - Atlanta, Georgia (Dekalb)^2.16.840.1.114222.4.1.237821^ISO|Testing Lab^12D4567890^CLIA|LA-ELR^LA-ELR^ISO|LADOH^LADOH^ISO|20240605185501+0000||ORU^R01^ORU_R01|0bab3f94-feb4-4915-939d-1adc5da201f3|P|2.5.1|||NE|NE|USA|UNICODE UTF-8|ENG^English^ISO||PHLabReport-NoAck^ELR_Receiver^2.16.840.1.113883.9.11^ISOSFT|Centers for Disease Control and Prevention|0.2-SNAPSHOT|PRIME ReportStream|0.2-SNAPSHOT||20240605154252+0000PID|1||7c0d1de9-270e-4d9c-a4ec-af92560cec67^^^Testing Lab&12D4567890&CLIA^PI^Testing Lab&12D4567890&CLIA||Granger^Hermione^^^^^L||19900721|F||2028-9^asian^HL70005^^^^2.5.1^^asian|53 Buttonwood Ave^^Brooklyn^LA^11224^USA^^^22011||(212) 555 1234^PRS^CP^^1^212^5551234^^^^^(212) 555 1234|||||||||N^Not Hispanic or Latino^HL70189^^^^2.9^^Not Hispanic or Latino||||||||NORC|RE|0bab3f94-feb4-4915-939d-1adc5da201f3^Testing Lab^12D4567890^CLIA|0bab3f94-feb4-4915-939d-1adc5da201f3^Testing Lab^12D4567890^CLIA|||||||||1245319599^McTester^Phil^^^^^^NPI&2.16.840.1.113883.4.6&ISO^L^^^NPI||(530) 867 5309^WPN^PH^^1^530^8675309^^^^^(530) 867 5309|20240605185458+0000||||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Denver^LA^80210^USA|(530) 867 5309^WPN^PH^^1^530^8675309^^^^^(530) 867 5309|321 Ocean Drive^^Denver^LA^80210^USAOBR|1|0bab3f94-feb4-4915-939d-1adc5da201f3^Testing Lab^12D4567890^CLIA|0bab3f94-feb4-4915-939d-1adc5da201f3^Testing Lab^12D4567890^CLIA|94531-1^SARS-CoV-2 (COVID-19) RNA panel - Respiratory system specimen by NAA with probe detection^LN|||20240605183958+0000|||||||||1245319599^McTester^Phil^^^^^^NPI&2.16.840.1.113883.4.6&ISO^L^^^NPI|(530) 867 5309^WPN^PH^^1^530^8675309^^^^^(530) 867 5309|||||20240605185501+0000|||FOBX|1|CWE|94500-6^SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection^LN^^^^^^COVID-19||260373001^Detected^SCT||Not detected|A^Abnormal^HL70078^^^^2.7|||F|||20240605183958+0000|12D4567890^Testing Lab^CLIA||CareStart COVID-19 MDx RT-PCR_Access Bio, Inc.^CareStart COVID-19 MDx RT-PCR^^^^^^^CareStart COVID-19 MDx RT-PCR_Access Bio, Inc.|^^MNI|20240605185458+0000||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Denver^LA^80210^USAOBX|2|CWE|95419-8^Has symptoms related to condition of interest^LN^^^^2.69^^Has symptoms related to condition of interest||Y^Yes^HL70136||||||F|||20240605183958+0000|12D4567890^Testing Lab^CLIA||||||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Denver^LA^80210^USA|||||QSTOBX|3|DT|11368-8^Illness or injury onset date and time^LN^^^^^^Illness or injury onset date and time||20240601000000+0000||||||F|||20240605183958+0000|12D4567890^Testing Lab^CLIA||||||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Denver^LA^80210^USA|||||QSTOBX|4|CWE|82810-3^Pregnancy status^LN^^^^2.68^^Pregnancy status||60001007^Not pregnant^SCT||||||F|||20240605183958+0000|12D4567890^Testing Lab^CLIA||||||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Denver^LA^80210^USA|||||QSTOBX|5|CWE|95418-0^Employed in a healthcare setting^LN^^^^2.69^^Employed in a healthcare setting||Y^Yes^HL70136||||||F|||20240605183958+0000|12D4567890^Testing Lab^CLIA||||||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Denver^LA^80210^USA|||||QSTOBX|6|CWE|95421-4^Resides in a congregate care setting^LN^^^^2.69^^Resides in a congregate care setting||Y^Yes^HL70136||||||F|||20240605183958+0000|12D4567890^Testing Lab^CLIA||||||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Denver^LA^80210^USA|||||QSTSPM|1|0bab3f94-feb4-4915-939d-1adc5da201f3&Testing Lab&12D4567890&CLIA^0bab3f94-feb4-4915-939d-1adc5da201f3&Testing Lab&12D4567890&CLIA||258500001^Nasopharyngeal swab^SCT^^^^2.67^^Nasopharyngeal swab||||87100004^Topography unknown (body structure)^SCT^^^^^^Topography unknown (body structure)|||||||||20240605183958+0000|20240605183958+0000
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2 changes: 1 addition & 1 deletion prime-router/src/testIntegration/resources/datatests/translation-test-config.csv
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Expand Up @@ -61,4 +61,4 @@ FHIR_to_HL7/sample_NH_20240716-0001.fhir,,FHIR_to_HL7/sample_NH_202407016-0001.h
FHIR_to_HL7/sample_IL_20240802-0001.fhir,,FHIR_to_HL7/sample_IL_20240802-0001.hl7,classpath:/metadata/hl7_mapping/receivers/STLTs/IL/IL-receiver-transform.yml,HL7,PASS,"","","classpath:/metadata/fhir_transforms/senders/SimpleReport/simple-report-sender-transform.yml","","",""
FHIR_to_HL7/sample_WA_20240719-0001.fhir,,FHIR_to_HL7/sample_WA_20240719-0001.hl7,classpath:/metadata/hl7_mapping/receivers/STLTs/WA/WA-receiver-transform.yml,HL7,PASS,"","","classpath:/metadata/fhir_transforms/senders/SimpleReport/simple-report-sender-transform.yml","wa-phd.full-elr","",""
FHIR_to_HL7/sample_OH_20240718-0001.fhir,,FHIR_to_HL7/sample_OH_20240718-0001.hl7,classpath:/metadata/hl7_mapping/receivers/STLTs/OH/OH-receiver-transform.yml,HL7,PASS,"","","classpath:/metadata/fhir_transforms/senders/SimpleReport/simple-report-sender-transform.yml","","",""
FHIR_to_HL7/sample_LA_20240806-0001.fhir,,FHIR_to_HL7/sample_LA_20240806-0001.hl7,classpath:/metadata/hl7_mapping/receivers/STLTs/LA/LA-receiver-transform.yml,HL7,PASS,"","","classpath:/metadata/fhir_transforms/senders/SimpleReport/simple-report-sender-transform.yml","","",""
FHIR_to_HL7/sample_LA_20240806-0001.fhir,,FHIR_to_HL7/sample_LA_20240806-0001.hl7,classpath:/metadata/hl7_mapping/receivers/STLTs/LA/LA-receiver-transform.yml,HL7,PASS,"","","classpath:/metadata/fhir_transforms/senders/SimpleReport/simple-report-sender-transform.yml","","","classpath:/metadata/fhir_transforms/receivers/reference-range-enrichment.yml"

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