Skip to content

Commit

Permalink
Merge branch 'master' into josiahsiegel/add/cdctiautomated-env
Browse files Browse the repository at this point in the history
  • Loading branch information
@JosiahSiegel
JosiahSiegel committed Sep 5, 2024
2 parents 29b996b + 38ee70c commit 24cad65
Show file tree
Hide file tree
Showing 7 changed files with 735 additions and 6 deletions.
2 changes: 1 addition & 1 deletion .github/workflows/frontend_ci.yml
View file
Original file line number Diff line number Diff line change
Expand Up @@ -158,7 +158,7 @@ jobs:
cache-dependency-path: frontend-react/yarn.lock

- name: Download blob reports from GitHub Actions Artifacts
uses: actions/download-artifact@65a9edc5881444af0b9093a5e628f2fe47ea3b2e
uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16
with:
path: frontend-react/e2e-data
pattern: frontend-e2e-data--shard-*
Expand Down
4 changes: 2 additions & 2 deletions .github/workflows/release_to_github.yml
View file
Original file line number Diff line number Diff line change
Expand Up @@ -83,13 +83,13 @@ jobs:
fetch-depth: 0
- name: Download router artifact
if: ${{ needs.wf_vars.outputs.enable_builds == 'true' }}
uses: actions/download-artifact@65a9edc5881444af0b9093a5e628f2fe47ea3b2e
uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16
with:
name: prime-router-build-${{ needs.wf_vars.outputs.version }}
path: archives/
- name: Download frontend artifact
if: ${{ needs.wf_vars.outputs.enable_builds == 'true' }}
uses: actions/download-artifact@65a9edc5881444af0b9093a5e628f2fe47ea3b2e
uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16
with:
name: static-website-react-${{ needs.wf_vars.outputs.version }}
path: archives/
Expand Down
2 changes: 1 addition & 1 deletion ...esources/metadata/fhir_transforms/senders/SimpleReport/simple-report-sender-transform.yml
View file
Original file line number Diff line number Diff line change
Expand Up @@ -627,12 +627,12 @@ elements:
values:
partial: A
corrected: C
entered-in-error: C
amended: C
final: F
preliminary: P
cancelled: X


# Observation
- name: sr-observation-value-type-cwe
condition: '%resource.value is CodeableConcept'
Expand Down
2 changes: 1 addition & 1 deletion prime-router/src/testIntegration/resources/datatests/FHIR_to_HL7/sample_CO_20240403.hl7
View file
Original file line number Diff line number Diff line change
@@ -1 +1 @@
MSH|^~\&|CDC PRIME - Atlanta, Georgia (Dekalb)^2.16.840.1.114222.4.1.237821^ISO|CDC PRIME^11D2030855^CLIA|CO-ELR|CO|20240321222008+0000||ORU^R01^ORU_R01|a375227a-751f-4035-8e0b-e81322f356c9|P|2.5.1|||NE|NE|USA|UNICODE UTF-8|ENG^English^ISO||PHLabReport-NoAck^ELR_Receiver^2.16.840.1.113883.9.11^ISOSFT|Centers for Disease Control and Prevention|0.2-SNAPSHOT|PRIME ReportStream|0.2-SNAPSHOT||20240321194832+0000PID|1||10083d1d-dc8b-4ea0-91fa-8744cf0f013b^^^Testing Lab&12D4567890&CLIA^PI^Testing Lab&12D4567890&CLIA||Wolf^Karolann^^^^^L||19700201|F||1002-5^native^^^^^2.5.1^^native|123 Main st^^Austtin^TX^78731^USA||(800) 232 4636^PRS^CP^^1^800^2324636^^^^^(800) 232 4636|^NET^Internet^[email protected]||||||||H^Hispanic or Latino^HL70189^^^^2.9^^Hispanic or Latino||||||||NORC|RE|a375227a-751f-4035-8e0b-e81322f356c9^Testing Lab^12D4567890^CLIA|a375227a-751f-4035-8e0b-e81322f356c9^Testing Lab^12D4567890^CLIA|||||||||1245319599^McTester^Phil^^^^^^NPI&2.16.840.1.113883.4.6&ISO^L^^^NPI||(530) 867 5309^WPN^PH^^1^530^8675309^^^^^(530) 867 5309|20240321222008+0000||||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Houston^TX^77001^USA|(530) 867 5309^WPN^PH^^1^530^8675309^^^^^(530) 867 5309|321 Ocean Drive^^Houston^TX^77001^USAOBR|1|a375227a-751f-4035-8e0b-e81322f356c9^Testing Lab^12D4567890^CLIA|a375227a-751f-4035-8e0b-e81322f356c9^Testing Lab^12D4567890^CLIA|95422-2^Influenza virus A and B and SARS-CoV-2 (COVID-19) RNA panel - Respiratory system specimen by NAA with probe detection^LN|||20240321220508+0000|||||||||1245319599^McTester^Phil^^^^^^NPI&2.16.840.1.113883.4.6&ISO^L^^^NPI|(530) 867 5309^WPN^PH^^1^530^8675309^^^^^(530) 867 5309|||||20240321222008+0000OBX|1|CWE|92141-1^Influenza virus B RNA [Presence] in Respiratory system specimen by NAA with probe detection^LN^^^^^^Flu B||260373001^Detected^SCT|||A^Abnormal^HL70078^^^^2.7|||W|||20240321220508+0000|12D4567890^Testing Lab^CLIA||Influenza SARS-CoV-2 (Flu SC2) Multiplex Assay_Centers for Disease Control and Prevention (CDC)^Influenza SARS-CoV-2 (Flu SC2) Multiplex Assay^^^^^^^Influenza SARS-CoV-2 (Flu SC2) Multiplex Assay_Centers for Disease Control and Prevention (CDC)|10190302000222^^DII|20240321222008+0000||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Houston^TX^77001^USANTE|1||Corrected Result: DUPLICATE_TESTOBX|2|CWE|95423-0^Influenza virus A and B and SARS-CoV-2 (COVID-19) identified in Respiratory system specimen by NAA with probe detection^LN^^^^^^COVID-19||260373001^Detected^SCT|||A^Abnormal^HL70078^^^^2.7|||W|||20240321220508+0000|12D4567890^Testing Lab^CLIA||Influenza SARS-CoV-2 (Flu SC2) Multiplex Assay_Centers for Disease Control and Prevention (CDC)^Influenza SARS-CoV-2 (Flu SC2) Multiplex Assay^^^^^^^Influenza SARS-CoV-2 (Flu SC2) Multiplex Assay_Centers for Disease Control and Prevention (CDC)|10190302000222^^DII|20240321222008+0000||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Houston^TX^77001^USAOBX|3|CWE|92142-9^Influenza virus A RNA [Presence] in Respiratory system specimen by NAA with probe detection^LN^^^^^^Flu A||260373001^Detected^SCT|||A^Abnormal^HL70078^^^^2.7|||W|||20240321220508+0000|12D4567890^Testing Lab^CLIA||Influenza SARS-CoV-2 (Flu SC2) Multiplex Assay_Centers for Disease Control and Prevention (CDC)^Influenza SARS-CoV-2 (Flu SC2) Multiplex Assay^^^^^^^Influenza SARS-CoV-2 (Flu SC2) Multiplex Assay_Centers for Disease Control and Prevention (CDC)|10190302000222^^DII|20240321222008+0000||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Houston^TX^77001^USAOBX|4|CWE|95419-8^Has symptoms related to condition of interest^LN^^^^2.69^^Has symptoms related to condition of interest||Y^Yes^HL70136|||^^^^^^2.7|||F|||20240321220508+0000|12D4567890^Testing Lab^CLIA||||||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Houston^TX^77001^USA|||||QSTOBX|5|DT|11368-8^Illness or injury onset date and time^LN^^^^^^Illness or injury onset date and time||20240321000000+0000|||^^^^^^2.7|||F|||20240321220508+0000|12D4567890^Testing Lab^CLIA||||||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Houston^TX^77001^USA|||||QSTOBX|6|CWE|82810-3^Pregnancy status^LN^^^^2.68^^Pregnancy status||60001007^Not pregnant^SCT|||^^^^^^2.7|||F|||20240321220508+0000|12D4567890^Testing Lab^CLIA||||||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Houston^TX^77001^USA|||||QSTOBX|7|CWE|95418-0^Employed in a healthcare setting^LN^^^^2.69^^Employed in a healthcare setting||Y^Yes^HL70136|||^^^^^^2.7|||F|||20240321220508+0000|12D4567890^Testing Lab^CLIA||||||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Houston^TX^77001^USA|||||QSTOBX|8|CWE|95421-4^Resides in a congregate care setting^LN^^^^2.69^^Resides in a congregate care setting||Y^Yes^HL70136|||^^^^^^2.7|||F|||20240321220508+0000|12D4567890^Testing Lab^CLIA||||||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Houston^TX^77001^USA|||||QSTOBX|9|CWE|76691-5^Gender identity^LN^^^^^^Gender identity||446151000124109^Male gender identity^SCT|||^^^^^^2.7|||F|||20240321220508+0000|12D4567890^Testing Lab^CLIA||||||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Houston^TX^77001^USA|||||QSTSPM|1|a375227a-751f-4035-8e0b-e81322f356c9&Testing Lab&12D4567890&CLIA^a375227a-751f-4035-8e0b-e81322f356c9&Testing Lab&12D4567890&CLIA||258467004^Nasopharyngeal washings^SCT^^^^2.67^^Nasopharyngeal washings||||87100004^Topography unknown (body structure)^SCT^^^^^^Topography unknown (body structure)|||||||||20240321220508+0000|20240321220508+0000
MSH|^~\&|CDC PRIME - Atlanta, Georgia (Dekalb)^2.16.840.1.114222.4.1.237821^ISO|CDC PRIME^11D2030855^CLIA|CO-ELR|CO|20240321222008+0000||ORU^R01^ORU_R01|a375227a-751f-4035-8e0b-e81322f356c9|P|2.5.1|||NE|NE|USA|UNICODE UTF-8|ENG^English^ISO||PHLabReport-NoAck^ELR_Receiver^2.16.840.1.113883.9.11^ISOSFT|Centers for Disease Control and Prevention|0.2-SNAPSHOT|PRIME ReportStream|0.2-SNAPSHOT||20240321194832+0000PID|1||10083d1d-dc8b-4ea0-91fa-8744cf0f013b^^^Testing Lab&12D4567890&CLIA^PI^Testing Lab&12D4567890&CLIA||Wolf^Karolann^^^^^L||19700201|F||1002-5^native^^^^^2.5.1^^native|123 Main st^^Austtin^TX^78731^USA||(800) 232 4636^PRS^CP^^1^800^2324636^^^^^(800) 232 4636|^NET^Internet^[email protected]||||||||H^Hispanic or Latino^HL70189^^^^2.9^^Hispanic or Latino||||||||NORC|RE|a375227a-751f-4035-8e0b-e81322f356c9^Testing Lab^12D4567890^CLIA|a375227a-751f-4035-8e0b-e81322f356c9^Testing Lab^12D4567890^CLIA|||||||||1245319599^McTester^Phil^^^^^^NPI&2.16.840.1.113883.4.6&ISO^L^^^NPI||(530) 867 5309^WPN^PH^^1^530^8675309^^^^^(530) 867 5309|20240321222008+0000||||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Houston^TX^77001^USA|(530) 867 5309^WPN^PH^^1^530^8675309^^^^^(530) 867 5309|321 Ocean Drive^^Houston^TX^77001^USAOBR|1|a375227a-751f-4035-8e0b-e81322f356c9^Testing Lab^12D4567890^CLIA|a375227a-751f-4035-8e0b-e81322f356c9^Testing Lab^12D4567890^CLIA|95422-2^Influenza virus A and B and SARS-CoV-2 (COVID-19) RNA panel - Respiratory system specimen by NAA with probe detection^LN|||20240321220508+0000|||||||||1245319599^McTester^Phil^^^^^^NPI&2.16.840.1.113883.4.6&ISO^L^^^NPI|(530) 867 5309^WPN^PH^^1^530^8675309^^^^^(530) 867 5309|||||20240321222008+0000|||COBX|1|CWE|92141-1^Influenza virus B RNA [Presence] in Respiratory system specimen by NAA with probe detection^LN^^^^^^Flu B||260373001^Detected^SCT|||A^Abnormal^HL70078^^^^2.7|||W|||20240321220508+0000|12D4567890^Testing Lab^CLIA||Influenza SARS-CoV-2 (Flu SC2) Multiplex Assay_Centers for Disease Control and Prevention (CDC)^Influenza SARS-CoV-2 (Flu SC2) Multiplex Assay^^^^^^^Influenza SARS-CoV-2 (Flu SC2) Multiplex Assay_Centers for Disease Control and Prevention (CDC)|10190302000222^^DII|20240321222008+0000||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Houston^TX^77001^USANTE|1||Corrected Result: DUPLICATE_TESTOBX|2|CWE|95423-0^Influenza virus A and B and SARS-CoV-2 (COVID-19) identified in Respiratory system specimen by NAA with probe detection^LN^^^^^^COVID-19||260373001^Detected^SCT|||A^Abnormal^HL70078^^^^2.7|||W|||20240321220508+0000|12D4567890^Testing Lab^CLIA||Influenza SARS-CoV-2 (Flu SC2) Multiplex Assay_Centers for Disease Control and Prevention (CDC)^Influenza SARS-CoV-2 (Flu SC2) Multiplex Assay^^^^^^^Influenza SARS-CoV-2 (Flu SC2) Multiplex Assay_Centers for Disease Control and Prevention (CDC)|10190302000222^^DII|20240321222008+0000||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Houston^TX^77001^USAOBX|3|CWE|92142-9^Influenza virus A RNA [Presence] in Respiratory system specimen by NAA with probe detection^LN^^^^^^Flu A||260373001^Detected^SCT|||A^Abnormal^HL70078^^^^2.7|||W|||20240321220508+0000|12D4567890^Testing Lab^CLIA||Influenza SARS-CoV-2 (Flu SC2) Multiplex Assay_Centers for Disease Control and Prevention (CDC)^Influenza SARS-CoV-2 (Flu SC2) Multiplex Assay^^^^^^^Influenza SARS-CoV-2 (Flu SC2) Multiplex Assay_Centers for Disease Control and Prevention (CDC)|10190302000222^^DII|20240321222008+0000||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Houston^TX^77001^USAOBX|4|CWE|95419-8^Has symptoms related to condition of interest^LN^^^^2.69^^Has symptoms related to condition of interest||Y^Yes^HL70136|||^^^^^^2.7|||F|||20240321220508+0000|12D4567890^Testing Lab^CLIA||||||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Houston^TX^77001^USA|||||QSTOBX|5|DT|11368-8^Illness or injury onset date and time^LN^^^^^^Illness or injury onset date and time||20240321000000+0000|||^^^^^^2.7|||F|||20240321220508+0000|12D4567890^Testing Lab^CLIA||||||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Houston^TX^77001^USA|||||QSTOBX|6|CWE|82810-3^Pregnancy status^LN^^^^2.68^^Pregnancy status||60001007^Not pregnant^SCT|||^^^^^^2.7|||F|||20240321220508+0000|12D4567890^Testing Lab^CLIA||||||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Houston^TX^77001^USA|||||QSTOBX|7|CWE|95418-0^Employed in a healthcare setting^LN^^^^2.69^^Employed in a healthcare setting||Y^Yes^HL70136|||^^^^^^2.7|||F|||20240321220508+0000|12D4567890^Testing Lab^CLIA||||||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Houston^TX^77001^USA|||||QSTOBX|8|CWE|95421-4^Resides in a congregate care setting^LN^^^^2.69^^Resides in a congregate care setting||Y^Yes^HL70136|||^^^^^^2.7|||F|||20240321220508+0000|12D4567890^Testing Lab^CLIA||||||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Houston^TX^77001^USA|||||QSTOBX|9|CWE|76691-5^Gender identity^LN^^^^^^Gender identity||446151000124109^Male gender identity^SCT|||^^^^^^2.7|||F|||20240321220508+0000|12D4567890^Testing Lab^CLIA||||||||Testing Lab^L^^^^CLIA&2.16.840.1.113883.4.7&ISO^XX^^^12D4567890|123 Beach Way^^Houston^TX^77001^USA|||||QSTSPM|1|a375227a-751f-4035-8e0b-e81322f356c9&Testing Lab&12D4567890&CLIA^a375227a-751f-4035-8e0b-e81322f356c9&Testing Lab&12D4567890&CLIA||258467004^Nasopharyngeal washings^SCT^^^^2.67^^Nasopharyngeal washings||||87100004^Topography unknown (body structure)^SCT^^^^^^Topography unknown (body structure)|||||||||20240321220508+0000|20240321220508+0000
Expand Down
Loading

0 comments on commit 24cad65

Please sign in to comment.