Rob/61 create social determinants of health custom query

query-connector/e2e/alternate_queries.spec.ts

@@ -53,8 +53,7 @@ test.describe("alternate queries with the Query Connector", () => {
     await expect(
       page.getByRole("heading", { name: "Select a query" }),
     ).toBeVisible();
-    // await page.getByTestId("Select").selectOption("social-determinants");
-    await page.getByTestId("Select").selectOption("cancer");
+    await page.getByTestId("Select").selectOption("social-determinants");
     await page.getByRole("button", { name: "Submit" }).click();
     await expect(page.getByText("Loading")).toHaveCount(0, { timeout: 10000 });
 

query-connector/flyway/sql/V01_02__load_tcr_data.sql

@@ -175312,3 +175312,4 @@ INSERT INTO icd_crosswalk VALUES('81590','Z993','V463','00000');
 INSERT INTO icd_crosswalk VALUES('81591','Z9981','V462','00000');
 INSERT INTO icd_crosswalk VALUES('81592','Z9989','V468','10000');
 INSERT INTO icd_crosswalk VALUES('81593','Z9989','V469','10000');
+

query-connector/flyway/sql/V01_03__insert_hardcoded_values.sql

@@ -1,6 +1,6 @@
 INSERT INTO conditions VALUES('1','DIBBs Local Code System','Newborn Screening','20240909');
 INSERT INTO conditions VALUES('2','DIBBs Local Code System','Cancer (Leukemia)','20240909');
-INSERT INTO conditions VALUES('3','DIBBs Local Code System','Social Determinants of Health','20240909'); -- has no valuesets
+INSERT INTO conditions VALUES('3','DIBBs Local Code System','Social Determinants of Health','20240909');
 
 -- Newborn Screening valueset(s)
 INSERT INTO valuesets VALUES('1_20240909','1','20240909','Newborn Screening','DIBBs','lotc');

query-connector/flyway/sql/V01_06__insert_sdoh_hardcoded_values.sql

@@ -0,0 +1,41 @@
+-- Insert hardcoded values for Social Determinants of Health
+INSERT INTO valuesets VALUES('17_20241028','17','20241028','Social Determinants of Health','DIBBs','lrtc');
+
+-- Add SDOH concepts related to housing
+INSERT INTO concepts VALUES('1_71802-3','71802-3','http://loinc.org','Housing status','','2024-10');
+
+-- These 3 are already in the data
+-- INSERT INTO concepts VALUES('1_11350-6','11350-6','http://loinc.org','History of Sexual behavior Narrative','','2024-10'); 
+-- INSERT INTO concepts VALUES('1_82810-3','82810-3','http://loinc.org','Pregnancy status','','2024-10'); --already in the data
+-- INSERT INTO concepts VALUES('1_83317-8','83317-8','http://loinc.org','Sexual activity with anonymous partner in the past year','','2024-10');
+
+-- Add SDOH as valueset belonging to SDOH condition
+INSERT INTO condition_to_valueset VALUES('1530','1','17_20241028','DIBBs');
+
+-- Add SDOH "labs" valueset to concept mappings
+INSERT INTO valueset_to_concept VALUES('45507','17_20241028','1_71802-3');
+INSERT INTO valueset_to_concept VALUES('45508','17_20241028','1_11350-6');
+INSERT INTO valueset_to_concept VALUES('45509','17_20241028','1_82810-3');
+INSERT INTO valueset_to_concept VALUES('45510','17_20241028','1_83317-8');
+
+-- Insert relevant query data
+-- Map the new valueset to the SDOH query & get the newly created id
+WITH inserted AS (
+    INSERT INTO query_to_valueset (id, query_id, valueset_id, valueset_oid)
+    VALUES (
+        uuid_generate_v4(), 
+        (SELECT id FROM query WHERE query_name = 'Social Determinants of Health'), 
+        '17_20241028', 
+        '17'
+    )
+    RETURNING id
+)
+-- Insert the concepts from the valueset into the query_included_concepts table
+INSERT INTO query_included_concepts (id, query_by_valueset_id, concept_id, include)
+SELECT 
+    uuid_generate_v4(), 
+    (SELECT id FROM inserted), 
+    concept_id, 
+    true
+FROM valueset_to_concept
+WHERE valueset_id = '17_20241028';

query-connector/src/app/constants.ts

@@ -40,11 +40,10 @@ export const demoQueryOptions = [
   { value: "chlamydia", label: "Chlamydia case investigation" },
   { value: "gonorrhea", label: "Gonorrhea case investigation" },
   { value: "newborn-screening", label: "Newborn screening follow-up" },
-  // Temporarily remove social determinants
-  // {
-  //   value: "social-determinants",
-  //   label: "Gather social determinants of health",
-  // },
+  {
+    value: "social-determinants",
+    label: "Gather social determinants of health",
+  },
   { value: "syphilis", label: "Syphilis case investigation" },
 ];