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Issue 536: Fix make dataframe function #537

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SamuelBrand1
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This PR closes #536.

This PR modifies the make_prediction_dataframe_from_output function to:

  1. Fix the function interface to the output data structure by responding to pipeline changes.
  2. Use new inference_config rather than logic on the filename of serialised object.

This PR also adds a small "test data" in the correct format for use in unit testing. From f2f discussion with @seabbs this is a temporary solution until we make a test which generates its own test data.

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github-actions bot commented Dec 9, 2024

Try this Pull Request!

Open Julia and type:

import Pkg
Pkg.activate(temp=true)
Pkg.add(url="https://github.com/CDCgov/Rt-without-renewal", rev="fix-make-pred-df", subdir="EpiAware")
using EpiAware

@SamuelBrand1
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Closing because mis-ordered

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function for making dataframes of results is broken
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