add a narrow dependency group for testing in CI (#348)

* add dependency group test

* update website build dep group

* change dep group for running deptry

* fix typo

* add dev group

* update dep group for running deptry

* moving packages between dep groups

* test jupyter dependencies

* Update .github/workflows/deptry.yml

Co-authored-by: Damon Bayer <[email protected]>

* update deptry

* remove pillow

---------

Co-authored-by: Damon Bayer <[email protected]>

.github/workflows/deptry.yml

@@ -1,4 +1,4 @@
-name: model
+name: dependency-check
 
 on:
   pull_request:
@@ -29,4 +29,4 @@ jobs:
 
       - name: run deptry
         run: |
-          poetry run deptry . --per-rule-ignores "DEP001=pyrenew,DEP003=pytest"
+          poetry run deptry . --per-rule-ignores "DEP001=pyrenew,DEP001=pytest,DEP003=pytest"

.github/workflows/test_model.yml

@@ -24,7 +24,7 @@ jobs:
         run: pip install poetry
 
       - name: install package
-        run: poetry install --with dev
+        run: poetry install --with test
 
       - name: run tests
         run: |

.github/workflows/test_pipeline.yml

@@ -22,7 +22,7 @@ jobs:
         run: pip install poetry
 
       - name: install package
-        run: poetry install --with dev
+        run: poetry install --with test
 
       - name: install pytest-cov
         run: poetry run pip install pytest-cov

.github/workflows/website.yaml

@@ -36,7 +36,7 @@ jobs:
         run: pip install poetry
 
       - name: install package
-        run: poetry install --with dev
+        run: poetry install --with docs
 
       # This section renders the quarto documents (and the README file)
       # and moves them to the docs/source/_compiled_qmd directory
@@ -92,7 +92,7 @@ jobs:
       run: pip install poetry
 
     - name: Install dependencies with Poetry
-      run: poetry install --with dev
+      run: poetry install --with docs
 
     # Building
     - name: Build HTML using Poetry

pyproject.toml

@@ -23,22 +23,31 @@ matplotlib = "^3.8.3"
 optional = true
 
 [tool.poetry.group.dev.dependencies]
-pyyaml = "^6.0.0"
+nbconvert = "^7.16.4"
+ipywidgets = "^8.1.3"
+deptry = "^0.17.0"
+
+[tool.poetry.group.docs]
+optional = true
+
+[tool.poetry.group.docs.dependencies]
 ipykernel = "^6.29.3"
+pyyaml = "^6.0.0"
 nbclient = "^0.10.0"
 nbformat = "^5.10.0"
-pytest-cov = "^5.0.0"
-pytest-mpl = "^0.17.0"
 numpydoc = "^1.7.0"
 arviz = "^0.18.0"
 sphinx = "^7.2.6"
 sphinxcontrib-mermaid = "^0.9.2"
 sphinx-autodoc-typehints = "^2.1.0"
 sphinx-book-theme = "^1.1.2"
-pillow = "^10.3.0"
-nbconvert = "^7.16.4"
-ipywidgets = "^8.1.3"
-deptry = "^0.17.0"
+
+[tool.poetry.group.test]
+optional = true
+
+[tool.poetry.group.test.dependencies]
+pytest-cov = "^5.0.0"
+pytest-mpl = "^0.17.0"
 
 [tool.numpydoc_validation]
 checks = [