Create Hosp Only Model from cdcgov/wastewater-informed-covid-forecasting #857
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| name: website | |
| on: | |
| push: | |
| branches: [main] | |
| pull_request: | |
| branches: [main] | |
| release: | |
| types: [published] | |
| # Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages | |
| permissions: | |
| contents: read | |
| pages: write | |
| id-token: write | |
| jobs: | |
| render-docs: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: quarto-dev/quarto-actions/setup@v2 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.12" | |
| - name: cache poetry | |
| uses: actions/cache@v4 | |
| with: | |
| path: ~/.local | |
| key: ${{ runner.os }}-poetry | |
| - name: install poetry | |
| run: pip install poetry | |
| - name: install package | |
| run: poetry install --with dev | |
| # This section renders the quarto documents (and the README file) | |
| # and moves them to the docs/source/_compiled_qmd directory | |
| # which is then uploaded as an artifact. | |
| - name: Render documents | |
| run: | | |
| poetry run quarto render README.md --to rst -o index2.rst | |
| mv docs/source/tutorials model/ | |
| cd model | |
| mkdir _compiled_qmd | |
| mv ../index2.rst _compiled_qmd | |
| for file in $(find tutorials -name '*.qmd'); do | |
| poetry run quarto render $file --to rst --output-dir ../_compiled_qmd | |
| done | |
| for rst_file in _compiled_qmd/*.rst; do | |
| poetry run python ../docs/post_process_rst.py "$rst_file" | |
| done | |
| # Upload | |
| - name: Upload artifacts | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: tutorials | |
| path: model/_compiled_qmd/ | |
| build: | |
| needs: render-docs | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: write | |
| steps: | |
| - uses: actions/checkout@v4 | |
| # Setting up the environment | |
| - name: Setup Pages | |
| uses: actions/configure-pages@v4 | |
| # Load the artifact github-pages-tutorials | |
| - name: Download artifacts | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: tutorials | |
| path: docs/source/tutorials/ | |
| - run: mv docs/source/tutorials/index2.rst docs/source/index.rst | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.12' | |
| - name: Install Poetry | |
| run: pip install poetry | |
| - name: Install dependencies with Poetry | |
| run: poetry install --with dev | |
| # Building | |
| - name: Build HTML using Poetry | |
| run: poetry run sphinx-build -M html docs/source/ docs/build/ | |
| # Upload | |
| - name: Upload artifacts | |
| uses: actions/upload-pages-artifact@v3 | |
| with: | |
| name: github-pages | |
| path: docs/build/html/ | |
| deploy: | |
| # Deploy to the github-pages environment | |
| # but not on PRs | |
| if: ${{ github.event_name != 'pull_request' }} | |
| environment: | |
| name: github-pages | |
| url: ${{ steps.deployment.outputs.page_url }} | |
| needs: build | |
| # Specify runner + deployment step | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Deploy to GitHub Pages | |
| id: deployment | |
| uses: actions/deploy-pages@v4 | |
| with: | |
| artifact_name: github-pages | |
| preview: true # Not yet available to the public. |