FunCode

This package provides various utilities for file manipulation and plotting simple statistics. It includes functions to handle encrypted Excel files, manipulate DataFrames, and generate plots.

Table of Contents

• FunCode
  • Table of Contents
  • Installation
  • Usage
  • modules
    • plotting
    • matching
  • Examples

Installation

To install the package, you can clone the repository:

git clone https://github.com/Anacristina0914/FunCode.git
cd FunCode
pip install -e .

Usage

from FunCode import matching, plotting
matching.function_name(args*)
plotting.function_name(args*)

modules

Functions on each module.

plotting

• plot_plate_positions
• make_barplot_sample_dist
• make_barplot_sample_dist_twogroups

matching

• make_excel_combinations
• convert_num_toexcel_col
• find_non_identical_columns
• hamming_distance
• find_similar_identifiers
• find_non_identical_columns
• get_keypass_password
• read_encrypted_excel
• map_str_to_value
• rename_columns
• sex_from_pn
• apply_sex_from_pn

Examples

from FunCode import matching, plotting

# See all arguments for a function
help(module.function_name)

# Read encrypted excel file using pw database and a key file
encrypted_excel = matching.read_encrypted_excel(pwd_db_path=pw_db, pw_file=pw_file, key_file_path=key_path,
                                                           file_path=database_dir, file_name=sle_fulldb_name)
# Plot sample dist using a column in a df
barplot_colname = plotting.make_barplot_sample_dist(db, group_col="col_name", plot_title="sample dist col_name", 
                                    y_axis_title="counts", x_axis_title="")