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Update run_paa_script.sh
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Use full path to /home/programs/
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jluebeck authored Mar 3, 2025
1 parent ff96608 commit 83a6a11
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion docker/run_paa_script.sh
Original file line number Diff line number Diff line change
Expand Up @@ -27,7 +27,7 @@ echo "###############################"
echo "RUNNING DOCKER STAGE..."
echo "${RUN_COMMAND}"

python programs/AmpliconSuite-pipeline-master/AmpliconSuite-pipeline.py $argstring &> /home/output/PAA_stdout.log
python /home/programs/AmpliconSuite-pipeline-master/AmpliconSuite-pipeline.py $argstring &> /home/output/PAA_stdout.log
echo "###############################"

echo "FINISHED DOCKER STAGE"
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