A list of interesting genome visualizers, genome browsers, or genome-browser-like implementations
- ATCC Genome Portal
- Ensembl genome browser
- GBrowse
- GBrowse 2
- IGV (java)
- IGV.js
- JBrowse
- NCBI Genome Data Viewer
- Trackster (in Galaxy)
- UCSC genome browser
- WashU epigenomics browser source
- Apollo desktop app. also see WebApollo, built on JBrowse
- 2020 Ensembl genome browser
- Artemis comparison tool (ACT)
- Biodalliance
- BrowseVCF
- CNVnator
- CuteVCF
- DNASkittle
- Epilogos
- GenomeRibbon
- Genoverse
- Gnomad browser
- HiGlass
- IslandPlot (D3, SVG) (source)
- Juicebox
- Locuszoom
- NGB
- Pileup.js
- PureScript genetics browser
- SEQing
- Savant
- SplitThreader
- TASUKE - from RAP-DB
- Tablet
- Valis browser - used on encodeproject.org (uses webGL)
- Varsome
- WebAsm demo browser
- GBrowseSyn
- SynBrowse
- Aequatus
- Biodalliance comparative demo
- CMap
- CVit
- CrossBrowse
- Cvit.js
- GIVE
- Genome context viewer
- MCScan (python version)
- MCScanX
- Multiple genome viewer
- Synteny browser
- AliTV
- BAMScale
- BioJS (MSA/msaR)
- CNView
- Chimeraviz
- Circos
- ClustersPloter
- DNAPlotLib
- FeatureViewer
- GGgenes
- Geneviz
- GenomeTools
- GenomeView
- Hagfish
- HiCPlotter
- Methplotlib
- Samplot
- Spliceclust
- genoPlotR
- karyoploteR (R)
- pyGenomeTracks
- svist4get
- svviz2
- svviz
- trackViewer (R)
- D-GENIES
- Dot
- Dotplot
- Jdot
- LAST (package contains a dotplotter)
- Minidot
- Mummer (contains a GNUplot script for dotplotting)
- Redottable
- Ideogram HumanIdeogramLibrary
- Ideogram (SVG)
- Karyotype
- RNA-seq view
Send in PRs for more stuff!