added cran/bioc packages

zlskidmore · May 21, 2019 · 0648e29 · 0648e29
2 parents c4ec715 + d437bbf
commit 0648e29
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/Dockerfile b/Dockerfile
@@ -34,4 +34,4 @@ RUN make install
 # install R packages
 RUN R --vanilla -e 'install.packages(c("devtools", "BiocManager"), repos="http://cran.us.r-project.org")'
 RUN R --vanilla -e 'BiocManager::install(c("biomaRt", "copynumber", "GenVisR", "fgsea", "deseq2", "EBSeq", "BSgenome.Hsapiens.UCSC.hg19", "BSgenome.Hsapiens.UCSC.hg38", "TxDb.Hsapiens.UCSC.hg19.knownGene", "TxDb.Hsapiens.UCSC.hg38.knownGene", "org.Hs.eg.db", "NanoStringDiff"))'
-RUN R --vanilla -e 'install.packages(c("ggplot2", "data.table", "sequenza", "dplyr", "reshape2", "tidyr", "viridis", "cowplot", "ggalluvial", "msigdbr", "ggdendro", "gridExtra", "deconstructSigs", "tidyverse", ), repos = "http://cran.us.r-project.org")'
+RUN R --vanilla -e 'install.packages(c("ggplot2", "data.table", "sequenza", "dplyr", "reshape2", "tidyr", "viridis", "cowplot", "ggalluvial", "msigdbr", "ggdendro", "gridExtra", "deconstructSigs", "tidyverse", "splitstackshape"), repos = "http://cran.us.r-project.org")'