handle site position and normal lists in add_adsorbate_to_site

zadorlab · Mar 12, 2025 · 2c4cd59 · 2c4cd59
1 parent a886eec
commit 2c4cd59
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/pynta/mol.py b/pynta/mol.py
@@ -241,10 +241,10 @@ def add_adsorbate_to_site(atoms, adsorbate, surf_ind, site, height=None,
         height = site_heights[site['site']]
 
     # Make the correct position
-    normal = site['normal']
+    normal = np.array(site['normal'])
     if np.isnan(np.sum(normal)):
         normal = np.array([0., 0., 1.])
-    pos = site['position'] + normal * height
+    pos = np.array(site['position']) + normal * height
 
     # Convert the adsorbate to an Atoms object
     if isinstance(adsorbate, Atoms):