The goal of meeqtl is to perform CpG sits methylation dependent eQTL (me_eQTL) analysis
You can install the released version of meeqtl from CRAN with:
install.packages("meeqtl")
And the development version from GitHub with:
# install.packages("devtools")
devtools::install_github("yzeng-lol/meeqtl")
This is schematic diagram shows you how meeqtl works: