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MDAnalysis/mdanalysis
MDAnalysis/mdanalysis PublicMDAnalysis is a Python library to analyze molecular dynamics simulations.
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BradyAJohnston/MolecularNodes
BradyAJohnston/MolecularNodes PublicToolbox for molecular animations in Blender, powered by Geometry Nodes.
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deeptime-ml/deeptime
deeptime-ml/deeptime PublicPython library for analysis of time series data including dimensionality reduction, clustering, and Markov model estimation
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markovmodel/PyEMMA
markovmodel/PyEMMA Public archive🚂 Python API for Emma's Markov Model Algorithms 🚂
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