DEP: move dev-only dependencies to requirements files

yt-project · Sep 11, 2024 · 621c71a · 621c71a
1 parent c9b12af
commit 621c71a
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Showing 9 changed files with 101 additions and 38 deletions.
diff --git a/.github/dependabot.yml b/.github/dependabot.yml
@@ -1,5 +1,14 @@
 version: 2
 updates:
+- package-ecosystem: pip
+  directory: /requirements
+  schedule:
+    interval: monthly
+  groups:
+    actions:
+      patterns:
+      - '*'
+
 - package-ecosystem: github-actions
   directory: /.github/workflows
   schedule:

diff --git a/.github/workflows/type-checking.yaml b/.github/workflows/type-checking.yaml
@@ -37,7 +37,7 @@ jobs:
     - name: Build
       run: |
         python3 -m pip install --upgrade pip
-        python3 -m pip install -e .[typecheck]
+        python3 -m pip install -e . -r requirements/typecheck.txt
 
     - run: python -m pip list
 

diff --git a/MANIFEST.in b/MANIFEST.in
@@ -70,5 +70,6 @@ include yt/default.mplstyle
 
 prune yt/frontends/_skeleton
 recursive-include yt/frontends/amrvac *.par
+exclude requirements
 exclude .codecov.yml .coveragerc .git-blame-ignore-revs .gitmodules .hgchurn .mailmap
 exclude .pre-commit-config.yaml clean.sh nose_answer.cfg nose_unit.cfg nose_ignores.txt
diff --git a/doc/source/developing/building_the_docs.rst b/doc/source/developing/building_the_docs.rst
@@ -90,7 +90,7 @@ the top level of a local copy, run
 
 .. code-block:: bash
 
-   $ python -m pip install -e ".[doc]"
+   $ python -m pip install -e . -r requirements/docs.txt
 
 Quick versus Full Documentation Builds
 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

diff --git a/pyproject.toml b/pyproject.toml
@@ -42,6 +42,8 @@ keywords = [
     "astronomy astrophysics visualization amr adaptivemeshrefinement",
 ]
 requires-python = ">=3.9.2"
+
+# keep in sync with requirements/minimal_env.txt
 dependencies = [
     "cmyt>=1.1.2",
     "ewah-bool-utils>=1.2.0",
@@ -190,37 +192,9 @@ full = [
 ]
 
 # dev-only extra targets
-doc = [
-    "alabaster>=0.7.13",
-    "bottle>=0.12.25",
-    "ipykernel>=6.29.4",
-    "jinja2<3.1.0", # see https://github.com/readthedocs/readthedocs.org/issues/9037
-    "jupyter-client>=8.3.1",
-    "nbsphinx>=0.9.3",
-    "nose~=1.3.7; python_version < '3.10'",
-    "pytest>=6.1",
-    "pyx>=0.15",
-    "sphinx>=7.2.5",
-    "sphinx-bootstrap-theme>=0.8.1",
-    "sphinx-rtd-theme>=1.3.0",
-]
 mapserver = [
     "bottle",
 ]
-minimal = [
-    "cmyt==1.1.2",
-    "ewah-bool-utils==1.2.0",
-    "matplotlib==3.5",
-    "more-itertools==8.4",
-    "numpy==1.19.3",
-    "packaging==20.9",
-    "pillow==8.0.0",
-    "tomli-w==0.4.0",
-    "tqdm==3.4.0",
-    "unyt==2.9.2",
-    "tomli==1.2.3;python_version < '3.11'",
-    "typing-extensions==4.4.0;python_version < '3.12'",
-]
 test = [
     "pyaml>=17.10.0",
     "pytest>=6.1",
@@ -231,13 +205,6 @@ test = [
     "nose-timer~=1.0.0; python_version < '3.10'",
     "imageio!=2.35.0", # see https://github.com/yt-project/yt/issues/4966
 ]
-typecheck = [
-    "mypy==1.8.0",
-    "types-PyYAML==6.0.12.12",
-    "types-chardet==5.0.4.6",
-    "types-requests==2.31.0.20240125",
-    "typing-extensions==4.4.0; python_version < '3.12'",
-]
 
 [project.scripts]
 yt = "yt.utilities.command_line:run_main"

diff --git a/requirements/docs.txt b/requirements/docs.txt
@@ -0,0 +1,12 @@
+alabaster>=0.7.13
+bottle>=0.12.25
+ipykernel>=6.29.4
+jinja2<3.1.0 # see https://github.com/readthedocs/readthedocs.org/issues/9037
+jupyter-client>=8.3.1
+nbsphinx>=0.9.3
+nose~=1.3.7; python_version < '3.10'
+pytest>=6.1
+pyx>=0.15
+sphinx>=7.2.5
+sphinx-bootstrap-theme>=0.8.1
+sphinx-rtd-theme>=1.3.0
diff --git a/requirements/minimal_env.txt b/requirements/minimal_env.txt
@@ -0,0 +1,69 @@
+# This file was autogenerated by uv via the following command:
+#    uv pip compile pyproject.toml --python=3.9 --python-platform=x86_64-unknown-linux-gnu --resolution=lowest-direct --no-build
+cmyt==1.1.2
+    # via yt (pyproject.toml)
+colorspacious==1.1.2
+    # via cmyt
+cycler==0.12.1
+    # via matplotlib
+ewah-bool-utils==1.2.0
+    # via yt (pyproject.toml)
+fonttools==4.53.1
+    # via matplotlib
+kiwisolver==1.4.7
+    # via matplotlib
+matplotlib==3.5.0
+    # via
+    #   yt (pyproject.toml)
+    #   cmyt
+more-itertools==8.4.0
+    # via
+    #   yt (pyproject.toml)
+    #   cmyt
+mpmath==1.3.0
+    # via sympy
+numpy==1.19.3
+    # via
+    #   yt (pyproject.toml)
+    #   cmyt
+    #   colorspacious
+    #   ewah-bool-utils
+    #   matplotlib
+    #   unyt
+packaging==20.9
+    # via
+    #   yt (pyproject.toml)
+    #   matplotlib
+    #   setuptools-scm
+pillow==8.0.0
+    # via
+    #   yt (pyproject.toml)
+    #   matplotlib
+pyparsing==3.1.4
+    # via
+    #   matplotlib
+    #   packaging
+python-dateutil==2.9.0.post0
+    # via matplotlib
+setuptools==74.1.2
+    # via setuptools-scm
+setuptools-scm==8.1.0
+    # via matplotlib
+six==1.16.0
+    # via python-dateutil
+sympy==1.13.2
+    # via unyt
+tomli==1.2.3
+    # via
+    #   yt (pyproject.toml)
+    #   setuptools-scm
+tomli-w==0.4.0
+    # via yt (pyproject.toml)
+tqdm==3.4.0
+    # via yt (pyproject.toml)
+typing-extensions==4.4.0
+    # via
+    #   yt (pyproject.toml)
+    #   setuptools-scm
+unyt==2.9.2
+    # via yt (pyproject.toml)
diff --git a/requirements/typecheck.txt b/requirements/typecheck.txt
@@ -0,0 +1,5 @@
+mypy==1.8.0
+types-PyYAML==6.0.12.12
+types-chardet==5.0.4.6
+types-requests==2.31.0.20240125
+typing-extensions==4.4.0; python_version < '3.12'
diff --git a/tests/ci_install.sh b/tests/ci_install.sh
@@ -32,7 +32,7 @@ fi
 # but the primary intention is to embed this script in CI jobs
 if [[ ${dependencies} == "minimal" ]]; then
     # test with minimal versions of runtime dependencies
-    python -m pip install -e ".[test,minimal]"
+    python -m pip install -e ".[test]" -r requirements/minimal_env.txt
 elif [[ ${dependencies} == "cartopy" ]]; then
     python -m pip install 'cartopy>=0.22'
     # scipy is an optional dependency to cartopy