Add copy to clipboard (#74) and markdown formatting (#78) features to makeOxygen()

[elipousson]

Also:

• Replace use of writeLines() when printing output with cli_code()
• Minor fixes to DESCRIPTION by removing miniUI + shiny from Imports + adding "Encoding: UTF-8"

[elipousson]

If this is a welcome pull request, it may be helpful to add an option to set the use_md parameter globally. Happy to add that in but wanted to check first.

[yonicd]

thanks for the PR. I will review it shortly

[codecov]

Codecov Report

Attention: Patch coverage is 78.85714% with 37 lines in your changes are missing coverage. Please review.

Project coverage is 35.53%. Comparing base (3d4acbb) to head (bc15033).

Files	Patch %	Lines
R/makeOxyFile.R	65.38%	9 Missing ⚠️
R/makeOxygen.R	92.91%	9 Missing ⚠️
R/makeDictionary.R	0.00%	7 Missing ⚠️
R/pretty_utils.R	22.22%	7 Missing ⚠️
R/makeImport.R	0.00%	3 Missing ⚠️
R/opts_complete.R	0.00%	2 Missing ⚠️

Additional details and impacted files

@@             Coverage Diff             @@
##           master      #79       +/-   ##
===========================================
+ Coverage   22.00%   35.53%   +13.53%     
===========================================
  Files          28       28               
  Lines        1177     1255       +78     
===========================================
+ Hits          259      446      +187     
+ Misses        918      809      -109     

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[yonicd]

Gha shows that {crayon} is missing from desc file. There is still a crayon::red somewhere hanging around that is being picked up in the ns.

[elipousson]

I’ll take a look and also fix the test coverage issues! The scope of this PR expanded a good bit beyond my initial draft back in August when I got back to it last night so, if you want some but not all of the code, just let me know and I can pull those changes back out again.

[elipousson]

I think I got the code coverage issues fixed.

The main additions beyond the original additional of auto-copying with {clipr} and markdown formatting with {roxygen2md} include:

• Refactoring makeOxygen() with new helper functions, new parameters for title/description, and the option to pull label parameters for data frame columns (enabled using the use_labels parameter), and adding support for vector data objects
• Refactoring makeOxyFile() to improve support for directory inputs and add dir.out parameter and to expose the new parameters added to makeOxygen()
• Convert error/informational messages to work with the cli package
• Update makeDictionary() to handle file as well as directory input paths
• Update tests and documentation to match the modified functions and add snake case-style aliases for several functions

I use sinew all the time and I'd love to get these changes into the package if possible. Let me know if any additional changes are needed!

[yonicd]

@elipousson it is great to hear that you are using the package!

I think the only thing left is to bump the version. Enough changes have been made to move from 0.4 to 0.5. After you change that I'll merge it into master.

Thanks for all the contributions!

[yonicd]

@elipousson thanks again for all the contributions and hard work of thinking how to refactor the package.

[elipousson]

@yonicd My pleasure! I have a few additional tweaks in mind but didn't want to crowd an already crowded PR after you had already signed off. Time permitting, I may open a new GitHub issue with those ideas in the next few weeks.