fixed wrong wildcard for single-read mhcI typing

ylab-hi · Mar 13, 2024 · 7b0aba8 · 7b0aba8
1 parent 6f08ee0
commit 7b0aba8
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/workflow/rules/common.smk b/workflow/rules/common.smk
@@ -168,6 +168,7 @@ def get_input_hlatyping_SE(wildcards):
   if config["preproc"]["activate"]:
     return expand("results/{sample}/{seqtype}/reads/{group}_preproc.fq.gz",
                   sample = wildcards.sample,
+                  seqtype = "dnaseq" if wildcards.nartype == "DNA" else "rnaseq",
                   group = wildcards.group)
   else:
     return config["data"][f"{seqtype}"][wildcards.group]