misxup dna/rna

ylab-hi · Aug 16, 2023 · 4fee7c5 · 4fee7c5
1 parent c8683c5
commit 4fee7c5
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/workflow/rules/align.smk b/workflow/rules/align.smk
@@ -170,8 +170,8 @@ rule realign:
     rg="results/{sample}/rnaseq/reads/{group}_readgroups.txt",
     idx = multiext("resources/refs/bwa/genome", ".amb", ".ann", ".bwt", ".pac", ".sa"),
   output:
-    bam="results/{sample}/dnaseq/align/{group}_final_BWA.bam",
-    idx="results/{sample}/dnaseq/align/{group}_final_BWA.bam.bai"
+    bam="results/{sample}/rnaseq/align/{group}_final_BWA.bam",
+    idx="results/{sample}/rnaseq/align/{group}_final_BWA.bam.bai"
   conda:
     "../envs/basic.yml"
   log: