added strand parameter (exitrons)

ylab-hi · Aug 31, 2024 · 17a8c90 · 17a8c90
1 parent 3701a2f
commit 17a8c90
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Showing 4 changed files with 4 additions and 1 deletion.
diff --git a/.github/workflows/linting.yml b/.github/workflows/linting.yml
@@ -26,7 +26,7 @@ jobs:
         with:
           directory: '.tests'
           snakefile: 'workflow/Snakefile'
-          args: '--lint --configfile config/config.yaml'
+          args: '--lint --configfile .tests/integration/config_basic/config.yaml'
 
 
   #run-workflow:

diff --git a/.tests/integration/config_basic/config.yaml b/.tests/integration/config_basic/config.yaml
@@ -53,6 +53,7 @@ exitronsplicing:
   activate: true # whether (=true) or not (=false) to include exitron-splicing events
   ao: 3  # allele observation
   pso: 0.05  # percent spliced out
+  strand: 1 # strand specificity of library (0=unstranded, 1=forward, 2=reverse)
 
 # gene fusion
 genefusion:

diff --git a/.tests/integration/custom-test/config/config.yaml b/.tests/integration/custom-test/config/config.yaml
@@ -48,6 +48,7 @@ exitronsplicing:
   activate: false # whether (=true) or not (=false) to include exitron-splicing events
   ao: 3  # allele observation
   pso: 0.05  # percent spliced out
+  strand: 1 # strand specificity of library (0=unstranded, 1=forward, 2=reverse)
 
 # gene fusion
 genefusion:

diff --git a/.tests/integration/indel-test/config/config_SE.yml b/.tests/integration/indel-test/config/config_SE.yml
@@ -49,6 +49,7 @@ exitronsplicing:
   activate: false # whether (=true) or not (=false) to include exitron-splicing events
   ao: 3  # allele observation
   pso: 0.05  # percent spliced out
+  strand: 1 # strand specificity of library (0=unstranded, 1=forward, 2=reverse)
 
 # gene fusion
 genefusion: