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yh202109 committed Jul 22, 2024
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4 changes: 2 additions & 2 deletions _downloads/214d05cd65dcc9387b037da1ce5a5c33/report.html
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2 changes: 1 addition & 1 deletion _downloads/9911a4d807ac9f1a695f0aa2cf687076/coverage.xml
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6 changes: 3 additions & 3 deletions _sources/statlab_kappa2.rst.txt
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Expand Up @@ -312,9 +312,9 @@ The second element of :eq:`eq_kappa2_vn2` can be calculated, using
:label: eq_kappa2_vn5
E\left( \sum_j\sum_{k \neq j} N_{ij}^2 N_{ik}^2 \right)
=& R(R-1) + R(R-1)(2R-5)(\sum_j p_j^2)
- 2R(R-1)(R-2)(\sum_j p_j^3) \\
&- R(R-1)(R-2)(R-3) \sum_j p_j^4 + R(R-1)(R-2)(R-3) (\sum_{j} p_j^2)^2
=& R(R-1) + R(R-1)(2R-5)\left(\sum_j p_j^2\right)
- 2R(R-1)(R-2)\left(\sum_j p_j^3\right) \\
&- R(R-1)(R-2)(R-3)\left(\sum_j p_j^4 \right) + R(R-1)(R-2)(R-3) \left(\sum_{j} p_j^2\right)^2
Combining :eq:`eq_kappa2_vn3`, :eq:`eq_kappa2_vn4`, and :eq:`eq_kappa2_vn5`,
:eq:`eq_kappa2_vn2` can be calculated as [2]_ :sup:`(Eq. 15)`
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2 changes: 1 addition & 1 deletion _static/reports/coverage/coverage.xml
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2 changes: 1 addition & 1 deletion _static/reports/junit/junit.xml
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4 changes: 2 additions & 2 deletions _static/reports/junit/report.html
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8 changes: 4 additions & 4 deletions example_cdtg.html
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Expand Up @@ -133,15 +133,15 @@ <h1>U/Graph/Categorical Plots Using catPlotter<a class="headerlink" href="#u-gra
</div>
</div>
<div class="cell_output docutils container">
<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/home/runner/.cache/pypoetry/virtualenvs/mtbp3-STzYEG9e-py3.10/lib/python3.10/site-packages/seaborn/categorical.py:3399: UserWarning: 16.7% of the points cannot be placed; you may want to decrease the size of the markers or use stripplot.
<div class="output stderr highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>/home/runner/.cache/pypoetry/virtualenvs/mtbp3-STzYEG9e-py3.10/lib/python3.10/site-packages/seaborn/categorical.py:3399: UserWarning: 11.1% of the points cannot be placed; you may want to decrease the size of the markers or use stripplot.
warnings.warn(msg, UserWarning)
/home/runner/.cache/pypoetry/virtualenvs/mtbp3-STzYEG9e-py3.10/lib/python3.10/site-packages/seaborn/categorical.py:3399: UserWarning: 20.0% of the points cannot be placed; you may want to decrease the size of the markers or use stripplot.
/home/runner/.cache/pypoetry/virtualenvs/mtbp3-STzYEG9e-py3.10/lib/python3.10/site-packages/seaborn/categorical.py:3399: UserWarning: 25.0% of the points cannot be placed; you may want to decrease the size of the markers or use stripplot.
warnings.warn(msg, UserWarning)
/home/runner/.cache/pypoetry/virtualenvs/mtbp3-STzYEG9e-py3.10/lib/python3.10/site-packages/seaborn/categorical.py:3399: UserWarning: 30.0% of the points cannot be placed; you may want to decrease the size of the markers or use stripplot.
warnings.warn(msg, UserWarning)
</pre></div>
</div>
<img alt="_images/0a42d9fca553a1333580ef3975925b7e5c55252e1ea5ffd7513c9282dd8044ed.png" src="_images/0a42d9fca553a1333580ef3975925b7e5c55252e1ea5ffd7513c9282dd8044ed.png" />
<img alt="_images/b48368b32682c4cc9ab6249c62eef7d29bd38d3e5a903ca07b6c911f1f2a03f5.png" src="_images/b48368b32682c4cc9ab6249c62eef7d29bd38d3e5a903ca07b6c911f1f2a03f5.png" />
</div>
</div>
<p>To create a line plot:</p>
Expand All @@ -153,7 +153,7 @@ <h1>U/Graph/Categorical Plots Using catPlotter<a class="headerlink" href="#u-gra
</div>
</div>
<div class="cell_output docutils container">
<img alt="_images/23ad71503bc737c0ef0f31fd3623982e7946f33b75b17f58f86b8b6a8cad3e55.png" src="_images/23ad71503bc737c0ef0f31fd3623982e7946f33b75b17f58f86b8b6a8cad3e55.png" />
<img alt="_images/cfddb32ab3f2294e749768f3ba9bf366367e88e301af8cde289f5acf8720780c.png" src="_images/cfddb32ab3f2294e749768f3ba9bf366367e88e301af8cde289f5acf8720780c.png" />
</div>
</div>
</section>
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76 changes: 38 additions & 38 deletions example_clinical.html
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Expand Up @@ -131,8 +131,8 @@ <h2>Example 1<a class="headerlink" href="#example-1" title="Link to this heading
</div>
<div class="cell_output docutils container">
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span> study treatment subject visit meal calorie
0 STD1 TRT1 SUBJ01 VISIT1 1 982
1 STD1 TRT1 SUBJ01 VISIT1 2 1958
0 STD1 TRT1 SUBJ01 VISIT1 1 1338
1 STD1 TRT1 SUBJ01 VISIT1 2 1957
</pre></div>
</div>
</div>
Expand All @@ -149,12 +149,12 @@ <h2>Example 1<a class="headerlink" href="#example-1" title="Link to this heading
</div>
<div class="cell_output docutils container">
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span> study treatment subject visit N(0&lt;=X&lt;500) N(500&lt;=X&lt;1000) \
0 STD1 TRT1 SUBJ01 VISIT1 0 1
1 STD1 TRT1 SUBJ01 VISIT2 0 1
0 STD1 TRT1 SUBJ01 VISIT1 1 0
1 STD1 TRT1 SUBJ01 VISIT2 0 0

N(1000&lt;=V&lt;=2000) N(all)
0 2 3
1 2 3
0 4 5
1 3 3
</pre></div>
</div>
</div>
Expand All @@ -169,22 +169,22 @@ <h2>Example 1<a class="headerlink" href="#example-1" title="Link to this heading
</div>
<div class="cell_output docutils container">
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span> study treatment visit N(0&lt;=X&lt;3) N(3&lt;=X&lt;5) N(5&lt;=V&lt;=7) N(all)
0 STD1 TRT1 VISIT1 9 7 4 20
1 STD1 TRT1 VISIT2 4 9 1 14
2 STD1 TRT1 VISIT3 3 5 4 12
3 STD1 TRT1 VISIT4 1 4 3 8
4 STD1 TRT2 VISIT1 4 12 4 20
5 STD1 TRT2 VISIT2 3 5 2 10
6 STD1 TRT2 VISIT3 4 2 0 6
7 STD1 TRT2 VISIT4 1 1 1 3
8 STD2 TRT1 VISIT1 5 9 6 20
9 STD2 TRT1 VISIT2 4 8 5 17
10 STD2 TRT1 VISIT3 2 5 4 11
11 STD2 TRT1 VISIT4 0 3 3 6
12 STD2 TRT2 VISIT1 5 11 4 20
13 STD2 TRT2 VISIT2 1 5 9 15
14 STD2 TRT2 VISIT3 2 8 1 11
15 STD2 TRT2 VISIT4 0 4 3 7
0 STD1 TRT1 VISIT1 3 10 7 20
1 STD1 TRT1 VISIT2 5 6 5 16
2 STD1 TRT1 VISIT3 3 4 3 10
3 STD1 TRT1 VISIT4 3 3 1 7
4 STD1 TRT2 VISIT1 7 8 5 20
5 STD1 TRT2 VISIT2 4 6 3 13
6 STD1 TRT2 VISIT3 5 3 2 10
7 STD1 TRT2 VISIT4 0 2 1 3
8 STD2 TRT1 VISIT1 6 9 5 20
9 STD2 TRT1 VISIT2 4 6 1 11
10 STD2 TRT1 VISIT3 1 4 1 6
11 STD2 TRT1 VISIT4 1 3 1 5
12 STD2 TRT2 VISIT1 6 8 6 20
13 STD2 TRT2 VISIT2 3 9 4 16
14 STD2 TRT2 VISIT3 4 4 3 11
15 STD2 TRT2 VISIT4 2 4 1 7
</pre></div>
</div>
</div>
Expand All @@ -198,22 +198,22 @@ <h2>Example 1<a class="headerlink" href="#example-1" title="Link to this heading
</div>
<div class="cell_output docutils container">
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span> study treatment visit Sum(0&lt;=X&lt;3) Sum(3&lt;=X&lt;5) Sum(5&lt;=V&lt;=7) Sum(all)
0 STD1 TRT1 VISIT1 18 26 20 64
1 STD1 TRT1 VISIT2 8 32 5 45
2 STD1 TRT1 VISIT3 6 18 20 44
3 STD1 TRT1 VISIT4 2 13 15 30
4 STD1 TRT2 VISIT1 8 43 20 71
5 STD1 TRT2 VISIT2 6 15 10 31
6 STD1 TRT2 VISIT3 8 8 0 16
7 STD1 TRT2 VISIT4 2 3 5 10
8 STD2 TRT1 VISIT1 10 29 30 69
9 STD2 TRT1 VISIT2 8 26 25 59
10 STD2 TRT1 VISIT3 4 18 20 42
11 STD2 TRT1 VISIT4 0 12 15 27
12 STD2 TRT2 VISIT1 10 41 20 71
13 STD2 TRT2 VISIT2 2 16 45 63
14 STD2 TRT2 VISIT3 4 27 5 36
15 STD2 TRT2 VISIT4 0 14 15 29
0 STD1 TRT1 VISIT1 6 36 35 77
1 STD1 TRT1 VISIT2 10 21 25 56
2 STD1 TRT1 VISIT3 6 16 15 37
3 STD1 TRT1 VISIT4 6 11 5 22
4 STD1 TRT2 VISIT1 14 28 25 67
5 STD1 TRT2 VISIT2 8 20 15 43
6 STD1 TRT2 VISIT3 10 10 10 30
7 STD1 TRT2 VISIT4 0 8 5 13
8 STD2 TRT1 VISIT1 12 30 25 67
9 STD2 TRT1 VISIT2 8 21 5 34
10 STD2 TRT1 VISIT3 2 16 5 23
11 STD2 TRT1 VISIT4 2 10 5 17
12 STD2 TRT2 VISIT1 12 28 30 70
13 STD2 TRT2 VISIT2 6 30 20 56
14 STD2 TRT2 VISIT3 8 16 15 39
15 STD2 TRT2 VISIT4 4 13 5 22
</pre></div>
</div>
</div>
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Expand Up @@ -598,9 +598,6 @@ <h2>Module 4<a class="headerlink" href="#module-4" title="Link to this heading">
└── 4.3 Literature references
</pre></div>
</div>
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>
</pre></div>
</div>
</div>
</div>
</section>
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