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yh202109 committed Jul 19, 2024
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4 changes: 2 additions & 2 deletions _downloads/214d05cd65dcc9387b037da1ce5a5c33/report.html
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2 changes: 1 addition & 1 deletion _downloads/9911a4d807ac9f1a695f0aa2cf687076/coverage.xml
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14 changes: 11 additions & 3 deletions _sources/statlab_kappa2.rst.txt
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Expand Up @@ -277,11 +277,19 @@ where
and

.. math::
:label: eq_kappa2
:label: eq_kappa2_vn2
var\left(\sum_{j} N_{ij}^2 \right)
=& E\left(\sum_{j} N_{ij}^4\right) + E\left(\sum_j\sum_k N_{ij}^2 N_{ik}^2 \right) - \left(E\left(\sum_{j} N_{ij}^2\right)\right)^2 \\
=& 2R(R-1)\left(\sum_j p_j^2 - (2R-3)\left(\sum_j p_j^2\right)^2 + 2(R-2)\sum_j p_j^3\right).
=& E\left( \left(\sum_{j} N_{ij}^2\right)^2\right) - \left(E\left(\sum_{j} N_{ij}^2\right)\right)^2 \\
=& E\left(\sum_{j} N_{ij}^4\right) + E\left(\sum_j\sum_{k \neq j} N_{ij}^2 N_{ik}^2 \right) - \left(E\left(\sum_{j} N_{ij}^2\right)\right)^2.
:eq:`eq_kappa2_vn2` can be calculated as [2]_ :sup:`(Eq. 15)`

.. math::
var\left(\sum_{j} N_{ij}^2 \right)
=& 2R(R-1)\left(\sum_j p_j^2 - (2R-3)\left(\sum_j p_j^2\right)^2 + 2(R-2)\sum_j p_j^3\right),
*************
Lab Exercise
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11 changes: 8 additions & 3 deletions _sources/std_cdisc.ipynb.txt
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Expand Up @@ -124,9 +124,14 @@
"cell_type": "markdown",
"metadata": {},
"source": [
"The connection requires personal key. \n",
"Therefore, this pages does not include test code demonstrations.\n",
"Please see API Reference for functions included in `stdcdisc.lib`."
"### Get CT Packages\n",
"\n",
"To get a list of newest CT packages available:\n",
"\n",
"```python\n",
"cl.get_ct_list()\n",
"print(cl.ct_list_titles)\n",
"```"
]
},
{
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2 changes: 1 addition & 1 deletion _static/reports/coverage/coverage.xml
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2 changes: 1 addition & 1 deletion _static/reports/junit/junit.xml
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4 changes: 2 additions & 2 deletions _static/reports/junit/report.html
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4 changes: 2 additions & 2 deletions example_cdtg.html
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Expand Up @@ -133,7 +133,7 @@ <h1>U/Graph/Categorical Plots Using catPlotter<a class="headerlink" href="#u-gra
</div>
</div>
<div class="cell_output docutils container">
<img alt="_images/9d09cb6faf2b296604203697d5dc338374e9885fd9d57fbbd440268a5f0c8ade.png" src="_images/9d09cb6faf2b296604203697d5dc338374e9885fd9d57fbbd440268a5f0c8ade.png" />
<img alt="_images/f3002788b186396814f829242835a3a845acaf96c4efdd948a22c5baf25dc495.png" src="_images/f3002788b186396814f829242835a3a845acaf96c4efdd948a22c5baf25dc495.png" />
</div>
</div>
<p>To create a line plot:</p>
Expand All @@ -145,7 +145,7 @@ <h1>U/Graph/Categorical Plots Using catPlotter<a class="headerlink" href="#u-gra
</div>
</div>
<div class="cell_output docutils container">
<img alt="_images/d998a589c240d64fdb44e3e809ed77a5755919c33257cfb01c24ed50373a473c.png" src="_images/d998a589c240d64fdb44e3e809ed77a5755919c33257cfb01c24ed50373a473c.png" />
<img alt="_images/b970724bd86e53fdab86a5e64b3d4dd18cd362cd3c04fe49b5e93a7aa1bc77c3.png" src="_images/b970724bd86e53fdab86a5e64b3d4dd18cd362cd3c04fe49b5e93a7aa1bc77c3.png" />
</div>
</div>
</section>
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74 changes: 37 additions & 37 deletions example_clinical.html
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Expand Up @@ -131,8 +131,8 @@ <h2>Example 1<a class="headerlink" href="#example-1" title="Link to this heading
</div>
<div class="cell_output docutils container">
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span> study treatment subject visit meal calorie
0 STD1 TRT1 SUBJ01 VISIT1 1 1371
1 STD1 TRT1 SUBJ01 VISIT1 2 810
0 STD1 TRT1 SUBJ01 VISIT1 1 1319
1 STD1 TRT1 SUBJ01 VISIT1 2 1432
</pre></div>
</div>
</div>
Expand All @@ -149,12 +149,12 @@ <h2>Example 1<a class="headerlink" href="#example-1" title="Link to this heading
</div>
<div class="cell_output docutils container">
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span> study treatment subject visit N(0&lt;=X&lt;500) N(500&lt;=X&lt;1000) \
0 STD1 TRT1 SUBJ01 VISIT1 0 2
0 STD1 TRT1 SUBJ01 VISIT1 0 1
1 STD1 TRT1 SUBJ01 VISIT2 0 0

N(1000&lt;=V&lt;=2000) N(all)
0 1 3
1 3 3
0 4 5
1 2 2
</pre></div>
</div>
</div>
Expand All @@ -169,22 +169,22 @@ <h2>Example 1<a class="headerlink" href="#example-1" title="Link to this heading
</div>
<div class="cell_output docutils container">
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span> study treatment visit N(0&lt;=X&lt;3) N(3&lt;=X&lt;5) N(5&lt;=V&lt;=7) N(all)
0 STD1 TRT1 VISIT1 4 12 4 20
1 STD1 TRT1 VISIT2 4 7 4 15
2 STD1 TRT1 VISIT3 6 5 2 13
3 STD1 TRT1 VISIT4 3 3 2 8
4 STD1 TRT2 VISIT1 5 11 4 20
5 STD1 TRT2 VISIT2 5 6 3 14
6 STD1 TRT2 VISIT3 2 5 2 9
7 STD1 TRT2 VISIT4 0 3 1 4
8 STD2 TRT1 VISIT1 6 10 4 20
9 STD2 TRT1 VISIT2 6 5 4 15
10 STD2 TRT1 VISIT3 1 5 2 8
11 STD2 TRT1 VISIT4 1 2 0 3
12 STD2 TRT2 VISIT1 6 6 8 20
13 STD2 TRT2 VISIT2 4 11 3 18
14 STD2 TRT2 VISIT3 6 5 6 17
15 STD2 TRT2 VISIT4 0 3 2 5
0 STD1 TRT1 VISIT1 9 9 2 20
1 STD1 TRT1 VISIT2 3 8 8 19
2 STD1 TRT1 VISIT3 8 5 1 14
3 STD1 TRT1 VISIT4 2 3 3 8
4 STD1 TRT2 VISIT1 5 7 8 20
5 STD1 TRT2 VISIT2 5 4 3 12
6 STD1 TRT2 VISIT3 1 5 0 6
7 STD1 TRT2 VISIT4 2 0 1 3
8 STD2 TRT1 VISIT1 5 12 3 20
9 STD2 TRT1 VISIT2 6 4 5 15
10 STD2 TRT1 VISIT3 5 3 1 9
11 STD2 TRT1 VISIT4 0 2 1 3
12 STD2 TRT2 VISIT1 5 6 9 20
13 STD2 TRT2 VISIT2 3 12 3 18
14 STD2 TRT2 VISIT3 2 5 4 11
15 STD2 TRT2 VISIT4 1 3 1 5
</pre></div>
</div>
</div>
Expand All @@ -198,22 +198,22 @@ <h2>Example 1<a class="headerlink" href="#example-1" title="Link to this heading
</div>
<div class="cell_output docutils container">
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span> study treatment visit Sum(0&lt;=X&lt;3) Sum(3&lt;=X&lt;5) Sum(5&lt;=V&lt;=7) Sum(all)
0 STD1 TRT1 VISIT1 8 42 20 70
1 STD1 TRT1 VISIT2 8 24 20 52
2 STD1 TRT1 VISIT3 12 18 10 40
3 STD1 TRT1 VISIT4 6 10 10 26
4 STD1 TRT2 VISIT1 10 34 20 64
5 STD1 TRT2 VISIT2 10 23 15 48
6 STD1 TRT2 VISIT3 4 16 10 30
7 STD1 TRT2 VISIT4 0 10 5 15
8 STD2 TRT1 VISIT1 12 34 20 66
9 STD2 TRT1 VISIT2 12 17 20 49
10 STD2 TRT1 VISIT3 2 17 10 29
11 STD2 TRT1 VISIT4 2 7 0 9
12 STD2 TRT2 VISIT1 12 23 40 75
13 STD2 TRT2 VISIT2 8 39 15 62
14 STD2 TRT2 VISIT3 12 18 30 60
15 STD2 TRT2 VISIT4 0 10 10 20
0 STD1 TRT1 VISIT1 18 30 10 58
1 STD1 TRT1 VISIT2 6 30 40 76
2 STD1 TRT1 VISIT3 16 17 5 38
3 STD1 TRT1 VISIT4 4 10 15 29
4 STD1 TRT2 VISIT1 10 25 40 75
5 STD1 TRT2 VISIT2 10 15 15 40
6 STD1 TRT2 VISIT3 2 18 0 20
7 STD1 TRT2 VISIT4 4 0 5 9
8 STD2 TRT1 VISIT1 10 41 15 66
9 STD2 TRT1 VISIT2 12 15 25 52
10 STD2 TRT1 VISIT3 10 11 5 26
11 STD2 TRT1 VISIT4 0 8 5 13
12 STD2 TRT2 VISIT1 10 21 45 76
13 STD2 TRT2 VISIT2 6 42 15 63
14 STD2 TRT2 VISIT3 4 18 20 42
15 STD2 TRT2 VISIT4 2 9 5 16
</pre></div>
</div>
</div>
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Expand Up @@ -598,9 +598,6 @@ <h2>Module 4<a class="headerlink" href="#module-4" title="Link to this heading">
└── 4.3 Literature references
</pre></div>
</div>
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>
</pre></div>
</div>
</div>
</div>
</section>
Expand Down Expand Up @@ -788,9 +785,6 @@ <h2>Module 5<a class="headerlink" href="#module-5" title="Link to this heading">
└── 5.4 Literature references
</pre></div>
</div>
<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>
</pre></div>
</div>
</div>
</div>
</section>
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