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v0.2.20
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yh202109 committed Jul 15, 2024
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3 changes: 1 addition & 2 deletions docs/example_emt3.ipynb
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},
"outputs": [],
"source": [
"print('\\n'.join(emt.show_fmq_tree(fmq_list[:2])))\n",
"\n"
"print('\\n'.join(emt.show_fmq_tree(fmq_list[:2])))"
]
},
{
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53 changes: 43 additions & 10 deletions docs/std_cdisc.ipynb
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@@ -1,5 +1,27 @@
{
"cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"<!-- \n",
" # Copyright (C) 2023-2024 Y Hsu <[email protected]>\n",
" #\n",
" # This program is free software: you can redistribute it and/or modify\n",
" # it under the terms of the GNU General Public license as published by\n",
" # the Free software Foundation, either version 3 of the License, or\n",
" # any later version.\n",
" #\n",
" # This program is distributed in the hope that it will be useful,\n",
" # but WITHOUT ANY WARRANTY; without even the implied warranty of\n",
" # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\n",
" # GNU General Public License for more details\n",
" #\n",
" # You should have received a copy of the GNU General Public license\n",
" # along with this program. If not, see <https://www.gnu.org/license/> \n",
"-->"
]
},
{
"cell_type": "markdown",
"metadata": {},
Expand All @@ -10,26 +32,32 @@
"As the name indicated, the organization engages with clinical data community and creates and maintains data standards for clinical developments, \n",
"such that the planning, creating, storing, using and exchanging of information and records can be processed at a higher level of consistency [^1].\n",
"\n",
"The modules started with `stdcd` include basic functions for processing data prepared with CDISC standards. "
"The modules `stcdisc` include basic functions for processing data already prepared with CDISC standards. "
]
},
{
"cell_type": "markdown",
"cell_type": "code",
"execution_count": null,
"metadata": {
"vscode": {
"languageId": "plaintext"
}
},
"outputs": [],
"source": [
"## CDISC Foundational Standards\n",
"\n",
"CDISC standards are used through medicinal product development processes, including nonclinical and clinical data collection, processing, reporting, analyzing and more.\n",
"CDSIC foundational standards include: \n",
"\n",
"- Standard for Exchange of Nonclinical Data (SEND),\n",
"- Clinical Data Acquisition Standards Harmonization (CDASH),\n",
"- Study Data Tabulation Model (SDTM),\n",
"- Study Data Tabulation Model Implementation Guide (SDTMIG),\n",
"- Data collection:\n",
" - Clinical Data Acquisition Standards Harmonization (CDASH),\n",
" - Clinical Data Acquisition Standards Harmonization Implementation Guide (CDASHIG),\n",
"- Data Tabulation:\n",
" - Standard for Exchange of Nonclinical Data (SEND),\n",
" - Standard for Exchange of Nonclinical Data Implementation Guide (SENDIG),\n",
" - Study Data Tabulation Model (SDTM),\n",
" - Study Data Tabulation Model Implementation Guide (SDTMIG),\n",
"- Analysis Data Model (ADaM),\n",
"- Questionnaires, Ratings and Scales (QRS), etc.\n"
]
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"cell_type": "markdown",
"metadata": {},
"source": [
"## CDISC Resource\n",
"## CDISC Library Resource\n",
"\n",
"To access CDISC library and documents, follow steps here to create cdiscID: https://www.cdisc.org/cdiscid-sign-insign-instructions\n",
"\n",
"Resource Links:\n",
"\n",
"- CDISC knowledge base: https://www.cdisc.org/kb"
"After login, show API key and save that to local accessible to environment.\n"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Please see API Reference for functions included in `stdcdisc.lib`."
]
},
{
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2 changes: 1 addition & 1 deletion docs/std_iso_pdf.ipynb
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"\n",
"- ISO 14289/PDF/UA for accessible PDF documents and processors (extends PDF/A conformance level A) \n",
"- ISO 15930/PDF/X for printing \n",
"- ISO 19005/PDF/**A for long-term archiving** [^3] \n",
"- ISO 19005/**PDF/A for long-term archiving** [^3] \n",
" - Sub-parts:\n",
" - ISO 19005-1:2005/PDF/A-1 (based on PDF v1.4)\n",
" - ISO 19005-2:2011/PDF/A-2 (based on PDF v1.7)\n",
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