Simply disable time_remove for now #928
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Extensions | |
| on: [push, pull_request] | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| extension: [ | |
| datalad-neuroimaging, | |
| datalad-container, | |
| datalad-metalad, | |
| datalad-crawler, | |
| datalad-deprecated, | |
| datalad-next, | |
| ] | |
| steps: | |
| - name: Set up system | |
| shell: bash | |
| run: | | |
| bash <(wget -q -O- http://neuro.debian.net/_files/neurodebian-travis.sh) | |
| # enable in case -devel version is needed | |
| # sudo sed -i-devel.list -e 's,/debian ,/debian-devel ,g' /etc/apt/sources.list.d/neurodebian.sources.list | |
| sudo apt-get update -qq | |
| sudo apt-get install eatmydata | |
| sudo eatmydata apt-get install git-annex-standalone | |
| - name: Set up environment | |
| run: | | |
| git config --global user.email "[email protected]" | |
| git config --global user.name "GitHub Almighty" | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python 3.8 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.8 | |
| - name: Install DataLad and dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r requirements-devel.txt | |
| - name: Setup ${{ matrix.extension }} extension specific variables | |
| run: | | |
| DL_PIP_INSTALLS=mock | |
| DL_APT_INSTALLS=dcm2niix | |
| DL_REPO=datalad/${{ matrix.extension }} | |
| DL_TESTER=pytest | |
| DL_NEED_SINGULARITY= | |
| # TODO: just reuse information from datalad-extensions!! | |
| case ${{ matrix.extension }} in | |
| datalad-container) | |
| DL_NEED_SINGULARITY=1;; | |
| esac | |
| { | |
| echo "DL_PIP_INSTALLS=$DL_PIP_INSTALLS" | |
| echo "DL_APT_INSTALLS=$DL_APT_INSTALLS" | |
| echo "DL_REPO=$DL_REPO" | |
| echo "DL_TESTER=$DL_TESTER" | |
| echo "DL_NEED_SINGULARITY=$DL_NEED_SINGULARITY" | |
| echo "DL_PACKAGE=$(echo ${{ matrix.extension }} | tr '-' '_')" | |
| } >> "$GITHUB_ENV" | |
| - name: Clone and install ${{ matrix.extension }} extension | |
| run: | | |
| git clone https://github.com/$DL_REPO __extension__ | |
| pip install ./__extension__[devel] | |
| - name: Install Singularity | |
| run: | | |
| release="$(curl -fsSL https://api.github.com/repos/sylabs/singularity/releases/latest | jq -r .tag_name)" | |
| codename="$(lsb_release -cs)" | |
| arch="$(dpkg --print-architecture)" | |
| cd /tmp | |
| wget -O singularity-ce.deb https://github.com/sylabs/singularity/releases/download/$release/singularity-ce_${release#v}-${codename}_$arch.deb | |
| sudo dpkg -i singularity-ce.deb | |
| sudo apt-get install -f | |
| if: env.DL_NEED_SINGULARITY == '1' | |
| - name: Install additional dependencies and prepare for testing | |
| run: | | |
| pip install $DL_PIP_INSTALLS | |
| [ -z "$DL_APT_INSTALLS" ] || sudo apt-get install $DL_APT_INSTALLS | |
| mkdir -p __testhome__ | |
| - name: WTF!? | |
| run: | | |
| datalad wtf | |
| - name: ${{ matrix.extension }} tests using pytest | |
| run: | | |
| cd __testhome__ | |
| # -crawler's tox.ini points to itself (but without full path) for coverage | |
| # configuration. So far attempts to "fix" by somehow providing full path did not work. | |
| # That is why just symlink it here. If no tox.ini -- create an empty one | |
| [ -e ../__extension__/tox.ini ] && ln -s ../__extension__/tox.ini . || touch tox.ini | |
| python -m pytest -c ./tox.ini -s -v --cov=datalad --pyargs ${DL_PACKAGE} | |
| if: env.DL_TESTER == 'pytest' | |
| - name: Prepare coverage | |
| run: | | |
| cd __testhome__ | |
| python -m coverage xml | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| directory: __testhome__ | |
| fail_ci_if_error: false |