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STAAR v0.9.7.1
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@xihaoli
xihaoli committed Aug 10, 2024
1 parent dc16648 commit 475b60a
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4 changes: 2 additions & 2 deletions DESCRIPTION
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@@ -1,8 +1,8 @@
Package: STAAR
Type: Package
Title: STAAR Procedure for Dynamic Incorporation of Multiple Functional Annotations in Whole-Genome Sequencing Studies
Version: 0.9.7
Date: 2024-05-19
Version: 0.9.7.1
Date: 2024-08-09
Author: Xihao Li [aut, cre], Zilin Li [aut, cre], Han Chen [aut]
Maintainer: Xihao Li <[email protected]>, Zilin Li <[email protected]>
Description: An R package for performing STAAR procedure in whole-genome sequencing studies.
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2 changes: 1 addition & 1 deletion R/RcppExports.R
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Expand Up @@ -135,5 +135,5 @@ matrix_impute <- function(G) {

# Register entry points for exported C++ functions
methods::setLoadAction(function(ns) {
.Call('_STAAR_RcppExport_registerCCallable', PACKAGE = 'STAAR')
.Call(`_STAAR_RcppExport_registerCCallable`)
})
2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -29,7 +29,7 @@ Please see the <a href="docs/STAAR_manual.pdf">**STAAR** user manual</a> for det
## Data Availability
The whole-genome functional annotation data assembled from a variety of sources and the precomputed annotation principal components are available at the [Functional Annotation of Variant - Online Resource (FAVOR)](https://favor.genohub.org) site and [FAVOR Essential Database](https://doi.org/10.7910/DVN/1VGTJI).
## Version
The current version is 0.9.7 (May 19, 2024).
The current version is 0.9.7.1 (August 9, 2024).
## Citation
If you use **STAAR** for your work, please cite:

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42 changes: 21 additions & 21 deletions src/RcppExports.cpp
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Expand Up @@ -46,7 +46,7 @@ RcppExport SEXP _STAAR_Bisection(SEXP egvaluesSEXP, SEXP qSEXP, SEXP xminSEXP, S
if (rcpp_isError_gen) {
SEXP rcpp_msgSEXP_gen = Rf_asChar(rcpp_result_gen);
UNPROTECT(1);
Rf_error(CHAR(rcpp_msgSEXP_gen));
Rf_error("%s", CHAR(rcpp_msgSEXP_gen));
}
UNPROTECT(1);
return rcpp_result_gen;
Expand Down Expand Up @@ -85,7 +85,7 @@ RcppExport SEXP _STAAR_Bisection_Binary_SPA(SEXP muhatSEXP, SEXP GSEXP, SEXP qSE
if (rcpp_isError_gen) {
SEXP rcpp_msgSEXP_gen = Rf_asChar(rcpp_result_gen);
UNPROTECT(1);
Rf_error(CHAR(rcpp_msgSEXP_gen));
Rf_error("%s", CHAR(rcpp_msgSEXP_gen));
}
UNPROTECT(1);
return rcpp_result_gen;
Expand Down Expand Up @@ -120,7 +120,7 @@ RcppExport SEXP _STAAR_CCT_pval(SEXP xSEXP, SEXP weightsSEXP) {
if (rcpp_isError_gen) {
SEXP rcpp_msgSEXP_gen = Rf_asChar(rcpp_result_gen);
UNPROTECT(1);
Rf_error(CHAR(rcpp_msgSEXP_gen));
Rf_error("%s", CHAR(rcpp_msgSEXP_gen));
}
UNPROTECT(1);
return rcpp_result_gen;
Expand Down Expand Up @@ -215,7 +215,7 @@ RcppExport SEXP _STAAR_K(SEXP xSEXP, SEXP egvaluesSEXP) {
if (rcpp_isError_gen) {
SEXP rcpp_msgSEXP_gen = Rf_asChar(rcpp_result_gen);
UNPROTECT(1);
Rf_error(CHAR(rcpp_msgSEXP_gen));
Rf_error("%s", CHAR(rcpp_msgSEXP_gen));
}
UNPROTECT(1);
return rcpp_result_gen;
Expand Down Expand Up @@ -251,7 +251,7 @@ RcppExport SEXP _STAAR_K1(SEXP xSEXP, SEXP egvaluesSEXP, SEXP qSEXP) {
if (rcpp_isError_gen) {
SEXP rcpp_msgSEXP_gen = Rf_asChar(rcpp_result_gen);
UNPROTECT(1);
Rf_error(CHAR(rcpp_msgSEXP_gen));
Rf_error("%s", CHAR(rcpp_msgSEXP_gen));
}
UNPROTECT(1);
return rcpp_result_gen;
Expand Down Expand Up @@ -288,7 +288,7 @@ RcppExport SEXP _STAAR_K1_Binary_SPA(SEXP xSEXP, SEXP muhatSEXP, SEXP GSEXP, SEX
if (rcpp_isError_gen) {
SEXP rcpp_msgSEXP_gen = Rf_asChar(rcpp_result_gen);
UNPROTECT(1);
Rf_error(CHAR(rcpp_msgSEXP_gen));
Rf_error("%s", CHAR(rcpp_msgSEXP_gen));
}
UNPROTECT(1);
return rcpp_result_gen;
Expand Down Expand Up @@ -325,7 +325,7 @@ RcppExport SEXP _STAAR_K1_Binary_SPA_alt(SEXP xSEXP, SEXP muhatSEXP, SEXP GSEXP,
if (rcpp_isError_gen) {
SEXP rcpp_msgSEXP_gen = Rf_asChar(rcpp_result_gen);
UNPROTECT(1);
Rf_error(CHAR(rcpp_msgSEXP_gen));
Rf_error("%s", CHAR(rcpp_msgSEXP_gen));
}
UNPROTECT(1);
return rcpp_result_gen;
Expand Down Expand Up @@ -360,7 +360,7 @@ RcppExport SEXP _STAAR_K2(SEXP xSEXP, SEXP egvaluesSEXP) {
if (rcpp_isError_gen) {
SEXP rcpp_msgSEXP_gen = Rf_asChar(rcpp_result_gen);
UNPROTECT(1);
Rf_error(CHAR(rcpp_msgSEXP_gen));
Rf_error("%s", CHAR(rcpp_msgSEXP_gen));
}
UNPROTECT(1);
return rcpp_result_gen;
Expand Down Expand Up @@ -396,7 +396,7 @@ RcppExport SEXP _STAAR_K2_Binary_SPA(SEXP xSEXP, SEXP muhatSEXP, SEXP GSEXP) {
if (rcpp_isError_gen) {
SEXP rcpp_msgSEXP_gen = Rf_asChar(rcpp_result_gen);
UNPROTECT(1);
Rf_error(CHAR(rcpp_msgSEXP_gen));
Rf_error("%s", CHAR(rcpp_msgSEXP_gen));
}
UNPROTECT(1);
return rcpp_result_gen;
Expand Down Expand Up @@ -432,7 +432,7 @@ RcppExport SEXP _STAAR_K2_Binary_SPA_alt(SEXP xSEXP, SEXP muhatSEXP, SEXP GSEXP)
if (rcpp_isError_gen) {
SEXP rcpp_msgSEXP_gen = Rf_asChar(rcpp_result_gen);
UNPROTECT(1);
Rf_error(CHAR(rcpp_msgSEXP_gen));
Rf_error("%s", CHAR(rcpp_msgSEXP_gen));
}
UNPROTECT(1);
return rcpp_result_gen;
Expand Down Expand Up @@ -468,7 +468,7 @@ RcppExport SEXP _STAAR_K_Binary_SPA(SEXP xSEXP, SEXP muhatSEXP, SEXP GSEXP) {
if (rcpp_isError_gen) {
SEXP rcpp_msgSEXP_gen = Rf_asChar(rcpp_result_gen);
UNPROTECT(1);
Rf_error(CHAR(rcpp_msgSEXP_gen));
Rf_error("%s", CHAR(rcpp_msgSEXP_gen));
}
UNPROTECT(1);
return rcpp_result_gen;
Expand Down Expand Up @@ -504,7 +504,7 @@ RcppExport SEXP _STAAR_K_Binary_SPA_alt(SEXP xSEXP, SEXP muhatSEXP, SEXP GSEXP)
if (rcpp_isError_gen) {
SEXP rcpp_msgSEXP_gen = Rf_asChar(rcpp_result_gen);
UNPROTECT(1);
Rf_error(CHAR(rcpp_msgSEXP_gen));
Rf_error("%s", CHAR(rcpp_msgSEXP_gen));
}
UNPROTECT(1);
return rcpp_result_gen;
Expand Down Expand Up @@ -543,7 +543,7 @@ RcppExport SEXP _STAAR_NR_Binary_SPA(SEXP muhatSEXP, SEXP GSEXP, SEXP qSEXP, SEX
if (rcpp_isError_gen) {
SEXP rcpp_msgSEXP_gen = Rf_asChar(rcpp_result_gen);
UNPROTECT(1);
Rf_error(CHAR(rcpp_msgSEXP_gen));
Rf_error("%s", CHAR(rcpp_msgSEXP_gen));
}
UNPROTECT(1);
return rcpp_result_gen;
Expand Down Expand Up @@ -744,7 +744,7 @@ RcppExport SEXP _STAAR_Saddle(SEXP qSEXP, SEXP egvaluesSEXP) {
if (rcpp_isError_gen) {
SEXP rcpp_msgSEXP_gen = Rf_asChar(rcpp_result_gen);
UNPROTECT(1);
Rf_error(CHAR(rcpp_msgSEXP_gen));
Rf_error("%s", CHAR(rcpp_msgSEXP_gen));
}
UNPROTECT(1);
return rcpp_result_gen;
Expand Down Expand Up @@ -783,7 +783,7 @@ RcppExport SEXP _STAAR_Saddle_Binary_SPA(SEXP qSEXP, SEXP muhatSEXP, SEXP GSEXP,
if (rcpp_isError_gen) {
SEXP rcpp_msgSEXP_gen = Rf_asChar(rcpp_result_gen);
UNPROTECT(1);
Rf_error(CHAR(rcpp_msgSEXP_gen));
Rf_error("%s", CHAR(rcpp_msgSEXP_gen));
}
UNPROTECT(1);
return rcpp_result_gen;
Expand Down Expand Up @@ -824,7 +824,7 @@ RcppExport SEXP _STAAR_Saddle_Binary_SPA_Bisection(SEXP qSEXP, SEXP muhatSEXP, S
if (rcpp_isError_gen) {
SEXP rcpp_msgSEXP_gen = Rf_asChar(rcpp_result_gen);
UNPROTECT(1);
Rf_error(CHAR(rcpp_msgSEXP_gen));
Rf_error("%s", CHAR(rcpp_msgSEXP_gen));
}
UNPROTECT(1);
return rcpp_result_gen;
Expand Down Expand Up @@ -858,7 +858,7 @@ RcppExport SEXP _STAAR_check_is_na(SEXP xSEXP) {
if (rcpp_isError_gen) {
SEXP rcpp_msgSEXP_gen = Rf_asChar(rcpp_result_gen);
UNPROTECT(1);
Rf_error(CHAR(rcpp_msgSEXP_gen));
Rf_error("%s", CHAR(rcpp_msgSEXP_gen));
}
UNPROTECT(1);
return rcpp_result_gen;
Expand Down Expand Up @@ -898,7 +898,7 @@ RcppExport SEXP _STAAR_goldenSectionSearchForSignChange(SEXP aSEXP, SEXP bSEXP,
if (rcpp_isError_gen) {
SEXP rcpp_msgSEXP_gen = Rf_asChar(rcpp_result_gen);
UNPROTECT(1);
Rf_error(CHAR(rcpp_msgSEXP_gen));
Rf_error("%s", CHAR(rcpp_msgSEXP_gen));
}
UNPROTECT(1);
return rcpp_result_gen;
Expand Down Expand Up @@ -933,7 +933,7 @@ RcppExport SEXP _STAAR_haveSameSign(SEXP aSEXP, SEXP bSEXP) {
if (rcpp_isError_gen) {
SEXP rcpp_msgSEXP_gen = Rf_asChar(rcpp_result_gen);
UNPROTECT(1);
Rf_error(CHAR(rcpp_msgSEXP_gen));
Rf_error("%s", CHAR(rcpp_msgSEXP_gen));
}
UNPROTECT(1);
return rcpp_result_gen;
Expand Down Expand Up @@ -967,7 +967,7 @@ RcppExport SEXP _STAAR_matrix_flip(SEXP GSEXP) {
if (rcpp_isError_gen) {
SEXP rcpp_msgSEXP_gen = Rf_asChar(rcpp_result_gen);
UNPROTECT(1);
Rf_error(CHAR(rcpp_msgSEXP_gen));
Rf_error("%s", CHAR(rcpp_msgSEXP_gen));
}
UNPROTECT(1);
return rcpp_result_gen;
Expand Down Expand Up @@ -1001,7 +1001,7 @@ RcppExport SEXP _STAAR_matrix_impute(SEXP GSEXP) {
if (rcpp_isError_gen) {
SEXP rcpp_msgSEXP_gen = Rf_asChar(rcpp_result_gen);
UNPROTECT(1);
Rf_error(CHAR(rcpp_msgSEXP_gen));
Rf_error("%s", CHAR(rcpp_msgSEXP_gen));
}
UNPROTECT(1);
return rcpp_result_gen;
Expand Down

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